{"id":"W2157748357","doi":"10.1093/bioinformatics/bti054","title":"Circular genome visualization and exploration using CGView","year":2004,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1122,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Genome Prairie; Genome Canada","keywords":"Scalable Vector Graphics; Visualization; Computer science; Java applet; Genome; Graphics; Documentation; Sample (material); World Wide Web; XML; Computer graphics; Computer graphics (images); Java; Information retrieval; Data mining; Biology; Programming language; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007673155,0.00008825802,0.00007885734,0.00002728643,0.00009251318,0.00002817541,0.00004641083,0.0000573768,0.000001245475],"category_scores_gemma":[0.00001760686,0.00008524041,0.00002532899,0.0000518023,0.00003490842,0.000003362768,0.00006105581,0.00001783502,0.00000449265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001283126,"about_ca_system_score_gemma":0.00003612517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005772461,"about_ca_topic_score_gemma":0.000003065331,"domain_scores_codex":[0.9995604,0.000006965389,0.0001757055,0.00008573439,0.00006229462,0.0001089134],"domain_scores_gemma":[0.99972,0.000001467644,0.0000678764,0.0001253416,0.00004782674,0.0000375264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002085144,0.0000656515,0.001300723,0.0003090952,0.0001489842,0.000001495366,0.003288994,0.009551961,0.9762536,0.004913023,0.00004672361,0.00409894],"study_design_scores_gemma":[0.01386399,0.003535265,0.04029803,0.0004111532,0.0007867994,0.0005768547,0.01530893,0.0742966,0.4994317,0.01830992,0.3274314,0.005749379],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9013913,0.001727499,0.09631797,0.00003136462,0.00006952013,0.0001543941,0.000008907173,0.000004325663,0.0002947154],"genre_scores_gemma":[0.9873778,0.001491539,0.01075055,0.0002069968,0.00008442295,0.000005078862,0.00006134842,0.00001085038,0.00001145337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4768219,"threshold_uncertainty_score":0.3476003,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02948202242176128,"score_gpt":0.2626183593228257,"score_spread":0.2331363369010644,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}