{"id":"W2157873810","doi":"10.1128/jb.187.23.7996-8005.2005","title":"Growth Substrate- and Phase-Specific Expression of Biphenyl, Benzoate, and C <sub>1</sub> Metabolic Pathways in <i>Burkholderia xenovorans</i> LB400","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Fonds Wetenschappelijk Onderzoek; National Institute of Environmental Health Sciences; Genome British Columbia; Vlaamse regering; U.S. Department of Energy","keywords":"Biochemistry; Biphenyl; Biology; Metabolic pathway; Catabolism; Enzyme; Metabolism; Chemistry; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001099541,0.0002766634,0.0002458402,0.0002891333,0.0001392137,0.0003886559,0.0001376931,0.0001952619,0.0005038592],"category_scores_gemma":[0.0002256972,0.0001830595,0.0001893565,0.000422212,0.000148652,0.000269828,0.000235082,0.0002804911,0.0003415921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003743218,"about_ca_system_score_gemma":0.0002101829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00225777,"about_ca_topic_score_gemma":0.002204846,"domain_scores_codex":[0.9998072,0.00002705808,0.00001784327,0.00005657196,0.00004649987,0.00004488751],"domain_scores_gemma":[0.9998066,0.00004131827,0.00006177283,0.00001938202,0.00003875544,0.00003222356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006507927,0.00000909206,0.0005580656,0.000009802084,0.000001928625,0.000008065274,0.000008796214,0.00001932698,0.9988511,0.00001064416,0.000009002862,0.0004491699],"study_design_scores_gemma":[0.0000132576,0.0002765295,0.08069167,0.000009044443,0.00002159061,0.0002779037,0.0001292031,0.001548287,0.9156581,0.00007766946,0.001282285,0.0000145507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959229,0.0005366975,0.001160182,0.00006843023,0.00000755715,0.00001486422,0.001586925,0.0000462023,0.0006562217],"genre_scores_gemma":[0.9906768,0.0004685893,0.002743189,0.00008244427,0.000009849785,0.00004203687,0.004554642,0.00003979614,0.001382711],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00225777,"threshold_uncertainty_score":0.004489243,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01414347836704532,"score_gpt":0.2120499216292474,"score_spread":0.1979064432622021,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}