{"id":"W2158073100","doi":"10.1006/jmbi.2001.4626","title":"Quantitative analysis of nucleic acid three-dimensional structures","year":2001,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":198,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Base pair; Stacking; Computer science; Protein Data Bank (RCSB PDB); Base (topology); Nucleotide; Graph; Crystallography; DNA; Chemistry; Stereochemistry; Theoretical computer science; Mathematics; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000363098,0.0001489713,0.0004315928,0.0002814803,0.00003452188,0.000006401339,0.0002770033,0.0002079933,0.000123996],"category_scores_gemma":[0.0001984564,0.0001165943,0.0004354067,0.0002940138,0.0001165203,0.000003650124,0.00006758281,0.0000998379,0.000001939153],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008517714,"about_ca_system_score_gemma":0.00007319819,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001185239,"about_ca_topic_score_gemma":0.00002343295,"domain_scores_codex":[0.9988152,0.0001863677,0.0004687098,0.000191556,0.0001540407,0.0001840885],"domain_scores_gemma":[0.9988381,0.00002891805,0.0005253926,0.0002423211,0.0002877031,0.00007755992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004189853,0.00004411755,0.002296816,0.000003426605,0.001698456,0.00003289502,0.00001188685,0.0006077106,0.990194,0.00251488,0.00005403085,0.002122835],"study_design_scores_gemma":[0.0004489314,0.001627944,0.003753074,0.00001048868,0.0005642151,0.0001240932,0.00002775209,0.0001379632,0.9857854,0.006011294,0.001346649,0.0001621471],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9355394,0.003514173,0.06046344,0.0001358615,0.0001431033,0.00006114595,0.00001551944,0.000002019387,0.0001253678],"genre_scores_gemma":[0.9859279,0.0001152151,0.01363004,0.0002075415,0.00006183053,0.00000149614,0.00002529396,0.00001367259,0.0000169919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05038854,"threshold_uncertainty_score":0.4754578,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01427252273773509,"score_gpt":0.2891800920237219,"score_spread":0.2749075692859868,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}