{"id":"W2158170462","doi":"10.1128/jb.01234-08","title":"Transcriptome Divergence and the Loss of Plasticity in <i>Bacillus subtilis</i> after 6,000 Generations of Evolution under Relaxed Selection for Sporulation","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"University of Arizona; U.S. Department of Agriculture; National Aeronautics and Space Administration; National Science Foundation","keywords":"Biology; Bacillus subtilis; Indel; Spore; Genetics; Transcriptome; Evolutionary biology; Most recent common ancestor; Parallel evolution; Gene; Phylogenetics; Gene expression; Microbiology; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002079717,0.000157957,0.0002819972,0.0002018227,0.0002159768,0.0004819446,0.0001463147,0.0003520907,0.0004852335],"category_scores_gemma":[0.0005791542,0.0001953323,0.0002350291,0.0002333732,0.0001937472,0.0002351277,0.0002882981,0.0007145907,0.0001985759],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003029515,"about_ca_system_score_gemma":0.000141666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007624534,"about_ca_topic_score_gemma":0.0008788904,"domain_scores_codex":[0.999848,0.00002557845,0.00001130789,0.00003796051,0.00004709993,0.00003002975],"domain_scores_gemma":[0.999674,0.00008328819,0.0000961265,0.00002385368,0.00005051617,0.00007221685],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001705226,0.00001316443,0.003442882,0.00001546735,0.000008060125,0.00004057885,0.00005811033,0.0001318195,0.9948891,0.0000434954,0.00002115293,0.001165644],"study_design_scores_gemma":[0.00003372207,0.0008006361,0.5616984,0.00002352676,0.00007701045,0.0009771853,0.0004632858,0.004174574,0.4283554,0.0004469058,0.002902529,0.0000468596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990156,0.0001385784,0.0003958665,0.00004136223,0.000003124429,0.000001635265,0.0001532147,0.00001214334,0.0002384135],"genre_scores_gemma":[0.9976803,0.0001313298,0.0006160046,0.00004540143,0.000004461253,0.00001064395,0.0009369268,0.00001769029,0.0005571847],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007624534,"threshold_uncertainty_score":0.0021981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01080441245758348,"score_gpt":0.2182105226721591,"score_spread":0.2074061102145756,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}