{"id":"W2158322957","doi":"10.1186/gb-2006-7-9-r86","title":"Multiple effects govern endogenous retrovirus survival patterns in human gene introns","year":2006,"lang":"en","type":"article","venue":"Genome biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Terry Fox Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genetics; Intron; RNA splicing; Gene; Transcription (linguistics); Endogenous retrovirus; Polyadenylation; splice; RNA; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001110348,0.0001471153,0.0002150614,0.00001705916,0.0001605399,0.00002032114,0.000225532,0.000142928,0.0002913277],"category_scores_gemma":[0.00002942435,0.0000663808,0.00007387701,0.0001742246,0.00004642985,0.00002350692,0.00010175,0.0001024192,0.00006839399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006041412,"about_ca_system_score_gemma":0.000007076431,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005548547,"about_ca_topic_score_gemma":0.01881453,"domain_scores_codex":[0.9988215,0.0001371215,0.0002341247,0.0003371954,0.00007092743,0.0003991445],"domain_scores_gemma":[0.9995701,0.0002062137,0.00007016817,0.00007573708,0.00002348353,0.00005432744],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000005847093,0.00008523025,0.2374907,0.000002285273,0.000005689861,0.00001324091,0.00001856074,0.00001045147,0.7601989,0.000490941,0.00000389626,0.00167421],"study_design_scores_gemma":[0.000387176,0.0003483197,0.9785624,0.000002207968,0.000007049704,0.00001722475,0.00001612969,0.00001016559,0.01130914,0.001413499,0.007736342,0.0001904121],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976499,0.0002882672,0.0000195485,0.0001761344,0.0002185786,0.000229536,0.0002827353,0.000046119,0.001089202],"genre_scores_gemma":[0.9982609,0.00002089366,0.00005060654,0.00007365175,0.0007573321,0.00003401025,0.000662149,0.000001430403,0.0001390039],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7488898,"threshold_uncertainty_score":0.9990895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01800219018482141,"score_gpt":0.2057244000256097,"score_spread":0.1877222098407883,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}