{"id":"W2158322957","doi":"10.1186/gb-2006-7-9-r86","title":"Multiple effects govern endogenous retrovirus survival patterns in human gene introns","year":2006,"lang":"en","type":"article","venue":"Genome biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Terry Fox Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genetics; Intron; RNA splicing; Gene; Transcription (linguistics); Endogenous retrovirus; Polyadenylation; splice; RNA; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002149375,0.000129065,0.0001376423,0.0003855792,0.0001285491,0.000396883,0.0001579871,0.0002158199,0.0009532796],"category_scores_gemma":[0.000665065,0.0001047863,0.0001606475,0.000197484,0.0002498635,0.0002495797,0.0001560831,0.0001890177,0.0004251534],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001754211,"about_ca_system_score_gemma":0.0001408081,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001692409,"about_ca_topic_score_gemma":0.0002916249,"domain_scores_codex":[0.9997968,0.00003163685,0.00001766187,0.00007334478,0.00005281728,0.00002778737],"domain_scores_gemma":[0.9992478,0.0003279107,0.0001912448,0.00004400836,0.0001183174,0.00007085503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002745494,0.00002504513,0.06469686,0.00007570803,0.00001685887,0.0001542929,0.0001408733,0.0003195822,0.927314,0.0006082317,0.0000335373,0.006340404],"study_design_scores_gemma":[0.000031556,0.0006312981,0.2974069,0.00004520847,0.00009612179,0.003052547,0.0003859589,0.007647115,0.6865312,0.001201052,0.002951798,0.0000192954],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964142,0.0004539005,0.00259914,0.000008783277,0.000002346821,0.000003943705,0.00006493492,0.00001855923,0.0004341806],"genre_scores_gemma":[0.9981224,0.0001623419,0.001308901,0.000008581459,0.000005464724,0.000006287131,0.0001767398,0.00001455325,0.0001947037],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009532796,"threshold_uncertainty_score":0.003189087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01800219018482141,"score_gpt":0.2057244000256097,"score_spread":0.1877222098407883,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}