{"id":"W2158341571","doi":"10.1128/jb.05414-11","title":"VasH Is a Transcriptional Regulator of the Type VI Secretion System Functional in Endemic and Pandemic Vibrio cholerae","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates; Fondation pour la Recherche Médicale","keywords":"Vibrio cholerae; Biology; Type VI secretion system; Bacteriophage; Effector; Regulator; Cholera; Gene; Genetics; Microbiology; Virulence; Cell biology; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004128936,0.0001017767,0.0002401265,0.00007814509,0.00003740638,0.000004858522,0.0001416512,0.0001558257,0.00005110607],"category_scores_gemma":[0.00007404748,0.00007098256,0.00009676152,0.00007626591,0.0001834933,0.00001048766,0.00007538423,0.0001779684,0.000001076283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004355288,"about_ca_system_score_gemma":0.0001653888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001654386,"about_ca_topic_score_gemma":0.00002381232,"domain_scores_codex":[0.9990047,0.0001679997,0.0004019589,0.0001414557,0.000119063,0.0001648173],"domain_scores_gemma":[0.9993425,0.00001591676,0.0002611691,0.0001332977,0.0001963883,0.0000507449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006257802,0.0000240535,0.1151868,0.00003317878,0.00009439627,0.00000176017,0.0002074092,0.000002040053,0.8834534,0.00006986794,0.0001419301,0.0001594375],"study_design_scores_gemma":[0.0008763889,0.0005502241,0.9773352,0.00006941119,0.00002252269,0.0004576985,0.0001279187,0.00001563375,0.01839839,0.00006825189,0.002004696,0.0000736443],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984865,0.0007085238,0.00009258705,0.0001030274,0.0003964315,0.00008640681,0.00001478808,0.00000193123,0.0001097799],"genre_scores_gemma":[0.9991592,0.0003630572,0.000134304,0.00007857782,0.0001835966,0.000003104616,0.000006046766,0.000008459348,0.00006367383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.865055,"threshold_uncertainty_score":0.2894585,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0310313930054262,"score_gpt":0.2454764752835729,"score_spread":0.2144450822781467,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}