{"id":"W2158372574","doi":"10.1128/ec.2.6.1336-1349.2003","title":"<i>Cryptococcus neoformans</i> Gene Expression during Experimental Cryptococcal Meningitis","year":2003,"lang":"en","type":"article","venue":"Eukaryotic Cell","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Michael Smith Health Research BC; University of Oklahoma; Burroughs Wellcome Fund","keywords":"Cryptococcus neoformans; Biology; Gene; Gene expression; Transcriptome; Cryptococcosis; Fungus; Adaptation (eye); Gene expression profiling; Microbiology; Genetics; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009066186,0.0002142855,0.0002783516,0.00008799236,0.0003258667,0.00002560912,0.00005144525,0.00007874888,0.001164083],"category_scores_gemma":[0.00002389515,0.000183009,0.0001371194,0.0001526174,0.00006284283,0.0001025342,0.00005864779,0.0001989194,0.000238401],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001115941,"about_ca_system_score_gemma":0.00003847106,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001274302,"about_ca_topic_score_gemma":8.10565e-7,"domain_scores_codex":[0.9987828,0.0000366774,0.0002713779,0.0003026886,0.0002133324,0.0003930983],"domain_scores_gemma":[0.9994084,0.00003056486,0.00005563825,0.000284039,0.00004403954,0.000177267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008828816,0.0005826909,0.06152081,0.00009074791,0.00003307943,0.0001453576,0.0006497086,0.00004051547,0.9329706,0.0001314729,0.003694208,0.0000525018],"study_design_scores_gemma":[0.002138456,0.0003174416,0.04168597,0.00006560711,0.00003590528,0.0001765985,0.0004466629,0.00002584386,0.9521683,0.00001885788,0.002712998,0.0002073976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9208664,0.001136958,0.000303401,0.00003714042,0.0004330989,0.0004953541,0.000003298738,0.0001188738,0.07660546],"genre_scores_gemma":[0.9925258,0.00006139703,0.003383394,0.00009408574,0.0001676004,0.0001015806,0.000009156784,0.00003262889,0.003624333],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07298113,"threshold_uncertainty_score":0.999749,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01124874649435619,"score_gpt":0.2423360033076038,"score_spread":0.2310872568132476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}