{"id":"W2158515313","doi":"10.1017/s0950268815000023","title":"Rapid spread of <i>Clostridium difficile</i> NAP1/027/ST1 in Chile confirms the emergence of the epidemic strain in Latin America","year":2015,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"","keywords":"Pulsed-field gel electrophoresis; Clostridium difficile; Multilocus sequence typing; Ribotyping; Microbiology; Typing; Virology; Biology; Strain (injury); Molecular epidemiology; Polymerase chain reaction; C difficile; Genotype; Gene; Genetics; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003229346,0.0001979412,0.0007623951,0.0001837292,0.00006304103,0.000002130717,0.0001537328,0.0002456857,0.0001467997],"category_scores_gemma":[0.006263718,0.0001202753,0.0001464506,0.0007944022,0.0007125541,0.00005648955,0.0001229027,0.0007714696,0.00000786032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007184988,"about_ca_system_score_gemma":0.0002109602,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004257408,"about_ca_topic_score_gemma":0.0004936391,"domain_scores_codex":[0.9968385,0.001156655,0.001035457,0.0003423885,0.0001987918,0.0004281776],"domain_scores_gemma":[0.9974551,0.001475371,0.0003870739,0.0004458207,0.0001185067,0.0001181196],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000696683,0.0005338368,0.9197089,0.0001808298,0.00007473701,0.000005908769,0.001002143,0.001093564,0.04738618,0.001219769,0.006914135,0.0211833],"study_design_scores_gemma":[0.003153212,0.00144026,0.9153803,0.0003838151,0.00008552781,0.00007852862,0.0009980832,0.005336494,0.06424004,0.001555418,0.007083979,0.0002643761],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892248,0.001930022,0.0000620856,0.005067796,0.0002599945,0.0006590042,0.00003148134,0.00001503337,0.002749776],"genre_scores_gemma":[0.9966826,0.002577341,0.00003875621,0.0004047763,0.0001206254,0.00004087866,0.00002076426,0.0000130919,0.0001011857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02091893,"threshold_uncertainty_score":0.7498708,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07437579290776802,"score_gpt":0.3371713225062322,"score_spread":0.2627955295984642,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}