{"id":"W2158588800","doi":"10.1186/1472-6807-11-27","title":"Crystal structure of alkyl hydroperoxidase D like protein PA0269 from Pseudomonas aeruginosa: Homology of the AhpD-like structural family","year":2011,"lang":"en","type":"article","venue":"BMC Structural Biology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Russian Academy of Sciences; National Institutes of Health; Industrial Macromolecular Crystallography Association Collaborative Access Team","keywords":"Biochemistry; Chemistry; Pseudomonas aeruginosa; Stereochemistry; Sequence alignment; Protein structure; Peptide sequence; Biology; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001216599,0.0004728452,0.0003749831,0.0001744954,0.0003987209,0.0004042014,0.0004769949,0.0005961373,0.002560467],"category_scores_gemma":[0.0002811406,0.0001530988,0.0001964155,0.0004460851,0.0001563442,0.0002255415,0.000202328,0.0009127507,0.0005656511],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007581551,"about_ca_system_score_gemma":0.0004883143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004022394,"about_ca_topic_score_gemma":0.004103463,"domain_scores_codex":[0.9998912,0.00001153757,0.000005250933,0.00002168483,0.00004950655,0.00002089877],"domain_scores_gemma":[0.9998728,0.00003005789,0.00002468113,0.000003611006,0.00003177939,0.0000370374],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001698871,0.0007896784,0.0133957,0.001161528,0.0001545805,0.003353346,0.0003993892,0.002839201,0.9430848,0.0008134682,0.01145125,0.02085822],"study_design_scores_gemma":[0.003698655,0.002687687,0.3353602,0.0004965484,0.0006951271,0.0180095,0.002177135,0.1215949,0.3822857,0.00177953,0.1309601,0.0002548202],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858738,0.005100407,0.001226926,0.0008102498,0.0001054619,0.00007402183,0.00266611,0.0002612897,0.003881733],"genre_scores_gemma":[0.9687762,0.003065014,0.00623085,0.0004229378,0.00004557012,0.0001235515,0.0168978,0.00008060901,0.004357447],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004022394,"threshold_uncertainty_score":0.008565605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02319069799413718,"score_gpt":0.2119449005143503,"score_spread":0.1887542025202132,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}