{"id":"W2158588800","doi":"10.1186/1472-6807-11-27","title":"Crystal structure of alkyl hydroperoxidase D like protein PA0269 from Pseudomonas aeruginosa: Homology of the AhpD-like structural family","year":2011,"lang":"en","type":"article","venue":"BMC Structural Biology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Russian Academy of Sciences; National Institutes of Health; Industrial Macromolecular Crystallography Association Collaborative Access Team","keywords":"Biochemistry; Chemistry; Pseudomonas aeruginosa; Stereochemistry; Sequence alignment; Protein structure; Peptide sequence; Biology; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001045112,0.0004409689,0.0006387406,0.00004275814,0.0002020896,0.00001421607,0.001090706,0.0005562452,0.000873817],"category_scores_gemma":[0.0001400504,0.0001568615,0.0002782562,0.0004797621,0.0008718269,0.0001673114,0.0003624556,0.0003964441,0.000006740545],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004130555,"about_ca_system_score_gemma":0.00005073712,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00733843,"about_ca_topic_score_gemma":0.004310255,"domain_scores_codex":[0.9971713,0.0005469169,0.0007818803,0.0006731268,0.0002702343,0.0005565202],"domain_scores_gemma":[0.9983942,0.0002391716,0.0006951134,0.0003393791,0.0002049193,0.0001272166],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001837454,0.00001313297,0.08448036,0.00001346758,0.0000505989,0.000002015166,0.0002197835,0.000003675385,0.9108491,0.001193205,0.00005017607,0.002940727],"study_design_scores_gemma":[0.0005078074,0.000436484,0.7612132,0.00002162171,0.00004806524,0.00002982807,0.0002884915,0.00007464524,0.2268776,0.01000835,0.000157658,0.0003362069],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961284,0.0004408494,0.000006941288,0.00009058227,0.001016715,0.0006833095,0.001476005,0.00006563395,0.00009152794],"genre_scores_gemma":[0.997321,0.000007289893,0.001596928,0.0001497376,0.0002514584,0.0000132664,0.0006069998,0.00000542613,0.00004795895],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6839715,"threshold_uncertainty_score":0.9992718,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02319069799413718,"score_gpt":0.2119449005143503,"score_spread":0.1887542025202132,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}