{"id":"W2158878884","doi":"10.1098/rstb.2007.2236","title":"Improvement of molecular phylogenetic inference and the phylogeny of Bilateria","year":2008,"lang":"en","type":"article","venue":"Philosophical Transactions of the Royal Society B Biological Sciences","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":179,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"Centre National de la Recherche Scientifique","keywords":"Bilateria; Paraphyly; Biology; Monophyly; Phylogenetic tree; Phylogenetics; Sister group; Evolutionary biology; Occam's razor; Zoology; Genetics; Gene; Statistics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0003104463,0.0001180286,0.0002298481,0.000007861472,0.0002386068,0.000003298377,0.0004136758,0.0001056701,0.000008903905],"category_scores_gemma":[0.00005378957,0.0000561233,0.0002992685,0.0001455865,0.004682731,6.639382e-7,0.000106699,0.00007482272,1.122768e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000030461,"about_ca_system_score_gemma":0.0000391826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005204587,"about_ca_topic_score_gemma":0.000001244679,"domain_scores_codex":[0.9990839,0.00007735161,0.0002899751,0.000237838,0.0001602457,0.0001506695],"domain_scores_gemma":[0.9994573,0.0000798999,0.0001488151,0.000207889,0.00007264606,0.00003345336],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005434882,0.0000814529,0.004965423,0.00001388402,0.00009242853,5.246399e-8,0.00009829445,0.001168214,0.9923272,0.0007519655,0.000002067543,0.0004447161],"study_design_scores_gemma":[0.001193265,0.001696234,0.0815426,0.00001840954,0.00008296966,0.000005550188,0.0001498158,0.0008280283,0.8903607,0.02383259,0.00006681097,0.0002230804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960316,0.001412792,0.001321924,0.0008060711,0.00005560556,0.0002038214,0.00003290395,0.000001292794,0.0001340141],"genre_scores_gemma":[0.9979687,0.001175177,0.0006873239,0.0001163419,0.00002620818,0.0000150989,6.338452e-7,0.000002949457,0.000007528314],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1019665,"threshold_uncertainty_score":0.998026,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02930394301055696,"score_gpt":0.2483577661511999,"score_spread":0.2190538231406429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}