{"id":"W2159207970","doi":"10.1093/nar/gkr990","title":"The UCSC Archaeal Genome Browser: 2012 update","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Toronto; University of California, Santa Cruz; National Science Foundation","keywords":"Genome browser; Biology; Genome; Computational biology; Genetics; Archaea; Gene; Genomics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001011792,0.0001419497,0.0001156392,0.00005137074,0.0006208636,0.00004301645,0.0007224937,0.0001183727,0.0001638065],"category_scores_gemma":[0.00007930113,0.0001025067,0.00008606732,0.0001389806,0.0005668516,0.000001035538,0.0007784498,0.0002523163,0.000232729],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001759312,"about_ca_system_score_gemma":0.00008683256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007090213,"about_ca_topic_score_gemma":0.000118831,"domain_scores_codex":[0.9982495,0.0001766376,0.0001891257,0.0003739439,0.0003079135,0.0007029084],"domain_scores_gemma":[0.9988693,0.00003252755,0.0000347112,0.0006895557,0.0002310296,0.0001428641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004562148,0.0001454249,0.009758969,0.00002191377,0.0003193312,0.00001587934,0.001085941,0.000005366009,0.9406759,0.005505266,0.02009903,0.02191084],"study_design_scores_gemma":[0.0003328713,0.0004207315,0.07467761,0.000003004433,0.000007614673,0.00001294219,0.0003649652,0.00001272458,0.02099139,0.002418602,0.900558,0.0001995362],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9682126,0.005361218,0.0000785447,0.0005343058,0.0001692455,0.0002820695,0.00003831991,0.000004971934,0.02531871],"genre_scores_gemma":[0.9910747,0.004199368,0.000641781,0.0001226406,0.0003602899,0.00005236113,0.00001629315,0.00003544167,0.003497107],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9196845,"threshold_uncertainty_score":0.4775244,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05434442086962955,"score_gpt":0.3068545004002386,"score_spread":0.2525100795306091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}