{"id":"W2159207970","doi":"10.1093/nar/gkr990","title":"The UCSC Archaeal Genome Browser: 2012 update","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Toronto; University of California, Santa Cruz; National Science Foundation","keywords":"Genome browser; Biology; Genome; Computational biology; Genetics; Archaea; Gene; Genomics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003814483,0.003077395,0.002195786,0.006674787,0.001069278,0.004649892,0.004788548,0.002042155,0.0378662],"category_scores_gemma":[0.006813925,0.003004826,0.001108256,0.01026819,0.0003590278,0.004582013,0.003427693,0.003749706,0.07363597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001322912,"about_ca_system_score_gemma":0.003847243,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01636461,"about_ca_topic_score_gemma":0.02947628,"domain_scores_codex":[0.9985423,0.0002610649,0.0002605291,0.0001763375,0.0006237818,0.0001360414],"domain_scores_gemma":[0.9965371,0.0004666527,0.0002842819,0.0005031287,0.001670904,0.0005379739],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000116952,0.00004826376,0.0006615367,0.0008074749,0.00004794579,0.0001017055,0.00005901388,0.0001744077,0.0009670738,0.0005102528,0.9177468,0.07875858],"study_design_scores_gemma":[0.00004664302,0.000009156674,0.001874703,0.0003361633,0.00004033761,0.0003863832,0.00003482859,0.0004499439,0.0006748937,0.0006344803,0.9954622,0.00005029466],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.005867045,0.06106264,0.06077243,0.006558471,0.004463832,0.0007071108,0.6459607,0.1600598,0.05454808],"genre_scores_gemma":[0.004087227,0.02421165,0.09433785,0.002073237,0.0008621562,0.0009744233,0.8208148,0.01524784,0.03739077],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.0378662,"threshold_uncertainty_score":0.1266751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05434442086962955,"score_gpt":0.3068545004002386,"score_spread":0.2525100795306091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}