{"id":"W2159441530","doi":"10.1128/aem.05625-11","title":"Complete Genome Sequence of the Fish Pathogen Flavobacterium branchiophilum","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institut National de la Recherche Agronomique; Agence Nationale de la Recherche","keywords":"Biology; Genome; Flavobacterium; Whole genome sequencing; Francisella; Virulence; Genetics; Pathogen; Gene; Comparative genomics; Microbiology; Genomics; Bacteria; Pseudomonas","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007096369,0.0002211249,0.0002677523,0.00003268252,0.0001616089,0.000003771326,0.0003325581,0.0001840148,0.000832209],"category_scores_gemma":[0.000001658659,0.0001580578,0.00009531413,0.00004976096,0.0009772783,0.00002951933,0.0004018481,0.0001619888,0.0001781333],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000209661,"about_ca_system_score_gemma":0.000007345981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002089501,"about_ca_topic_score_gemma":0.000007479768,"domain_scores_codex":[0.9989885,0.00006874397,0.0002584521,0.0003539424,0.00001171152,0.000318648],"domain_scores_gemma":[0.9994982,0.0000142261,0.000145713,0.0003163516,0.000003304139,0.0000222189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005621329,0.00009567016,0.001634106,0.00001633721,0.0001161023,0.000001345314,0.0005398941,1.998647e-7,0.9962087,0.0005922477,0.0003611911,0.0003780498],"study_design_scores_gemma":[0.002809342,0.0002165744,0.2261943,0.00002599424,0.0003091083,0.0002754216,0.001259423,3.509422e-7,0.3643027,0.0004897083,0.4033107,0.0008064245],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934051,0.0005003613,0.00001304735,0.00006877092,0.0003149061,0.0004009557,0.002569149,0.00002513117,0.002702552],"genre_scores_gemma":[0.9966537,0.0001076726,0.00004812718,0.000795823,0.0000154765,0.0000168715,0.001528302,0.00001589921,0.0008181552],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.631906,"threshold_uncertainty_score":0.9112105,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01303363174267673,"score_gpt":0.161656885078089,"score_spread":0.1486232533354123,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}