{"id":"W2159585370","doi":"10.1128/iai.01199-06","title":"Contribution of Phagocytosis and Intracellular Sensing for Cytokine Production by <i>Staphylococcus aureus</i> -Activated Macrophages","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Biology; TLR2; NOD1; Phagocytosis; Muramyl dipeptide; TLR4; Peptidoglycan; Microbiology; Cytokine; Lipoteichoic acid; NOD2; Tumor necrosis factor alpha; Cell biology; Staphylococcus aureus; Receptor; Bacteria; Innate immune system; Immunology; Immune system; Signal transduction; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003695327,0.0001300704,0.0002085698,0.0001073819,0.0003399662,0.00001807772,0.00002335714,0.0001786093,0.00001405056],"category_scores_gemma":[0.0001644226,0.000125157,0.00004338782,0.0001245744,0.0001689069,0.0001942748,0.00002401524,0.0001267515,0.000002599491],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003208153,"about_ca_system_score_gemma":0.00001488116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009203987,"about_ca_topic_score_gemma":0.00002277703,"domain_scores_codex":[0.9991565,0.0002194443,0.0002857372,0.0001540939,0.00002248814,0.0001617362],"domain_scores_gemma":[0.9993653,0.000093168,0.0001937408,0.0001265384,0.0002121487,0.0000090478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004461768,0.00008113058,0.0008299832,0.00003646812,0.0000608003,1.258762e-7,0.00007063222,0.000005675156,0.9898742,0.0001041201,0.00131596,0.007174711],"study_design_scores_gemma":[0.001232748,0.0002027006,0.009046073,0.00002835929,0.00005015332,0.00002296623,0.00004162882,0.00002513077,0.9621568,0.0001482837,0.02692638,0.0001187803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933512,0.002446416,0.003179283,0.0001958378,0.0002914639,0.0004003777,0.0000236969,0.000059455,0.00005227359],"genre_scores_gemma":[0.9987929,0.0003807271,0.0000325425,0.00001627287,0.00003161361,0.00001160318,0.0004102918,0.000009522647,0.0003144555],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02771742,"threshold_uncertainty_score":0.5103756,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005565924159064068,"score_gpt":0.2173837474340314,"score_spread":0.2118178232749673,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}