{"id":"W2159695933","doi":"10.3390/v7042168","title":"A Phylogeographic Investigation of African Monkeypox","year":2015,"lang":"en","type":"article","venue":"Viruses","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":146,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Oak Ridge Institute for Science and Education; Centers for Disease Control and Prevention; University of Victoria; Emory University; U.S. Department of Energy","keywords":"Monkeypox; Clade; Biology; Phylogeography; Phylogenetics; Evolutionary biology; Zoology; Ecology; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001968432,0.00007556321,0.000138193,0.0001587787,0.00003783738,0.000005420516,0.0001569452,0.00009184653,0.0001057765],"category_scores_gemma":[0.000179062,0.00006212775,0.00004113025,0.0002375741,0.0003457953,0.00008221484,0.00005516092,0.0001144899,0.000419059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000103045,"about_ca_system_score_gemma":0.00009683553,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009555835,"about_ca_topic_score_gemma":0.00005586004,"domain_scores_codex":[0.9993417,0.0001327307,0.0001470398,0.0001229888,0.00004520145,0.0002103733],"domain_scores_gemma":[0.9995593,0.00006472805,0.00006192895,0.0001778596,0.00008582204,0.00005030548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001656523,0.00004273212,0.06507754,0.000009557662,0.00008318329,0.000002387628,0.000681438,0.000001768604,0.9189957,0.001360067,0.01003591,0.003544042],"study_design_scores_gemma":[0.001027792,0.0003200211,0.03271802,0.00001786501,0.00001707402,0.000009967963,0.0004323555,0.000001874661,0.8628492,0.002854994,0.09962169,0.0001291313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932417,0.002884092,0.00001794983,0.00009803819,0.0001530249,0.00009418961,0.00004610718,0.00004741368,0.003417486],"genre_scores_gemma":[0.9993907,0.00004939376,0.00005652374,0.000210981,0.0000175525,0.00001181642,0.00001949338,0.000006815686,0.0002367279],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08958578,"threshold_uncertainty_score":0.5386295,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05997035393320936,"score_gpt":0.2846016643878677,"score_spread":0.2246313104546583,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}