{"id":"W2159695933","doi":"10.3390/v7042168","title":"A Phylogeographic Investigation of African Monkeypox","year":2015,"lang":"en","type":"article","venue":"Viruses","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":146,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Oak Ridge Institute for Science and Education; Centers for Disease Control and Prevention; University of Victoria; Emory University; U.S. Department of Energy","keywords":"Monkeypox; Clade; Biology; Phylogeography; Phylogenetics; Evolutionary biology; Zoology; Ecology; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004053865,0.0001513699,0.0001798376,0.002080211,0.0007610378,0.00042642,0.0001670779,0.0002191268,0.001541738],"category_scores_gemma":[0.001136659,0.0001171669,0.0001466996,0.001724075,0.0003861582,0.0003668161,0.0005429537,0.0002677142,0.0001082492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002871602,"about_ca_system_score_gemma":0.0001812189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004976892,"about_ca_topic_score_gemma":0.007236959,"domain_scores_codex":[0.9998146,0.00008106548,0.000006496241,0.00004663646,0.00001558486,0.00003553041],"domain_scores_gemma":[0.9996352,0.0001458722,0.0001059045,0.00002692486,0.00003835164,0.00004761164],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003825749,0.00006593444,0.9299632,0.0001037622,0.0001641979,0.00071121,0.00829614,0.001279861,0.02653071,0.002695887,0.0003306169,0.02947603],"study_design_scores_gemma":[0.000004949405,0.00003699127,0.9927968,0.00003312885,0.0000194147,0.0004096151,0.001846072,0.002438395,0.0003156076,0.0002876053,0.001805412,0.000005885904],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989495,0.0001653307,0.0002256837,0.00004750272,6.245567e-7,0.000004186681,0.00007858105,0.000001513312,0.0005271691],"genre_scores_gemma":[0.999315,0.0001525114,0.0003173315,0.000008142146,0.000001673472,0.000003937082,0.0001363548,0.000001708383,0.00006334675],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004976892,"threshold_uncertainty_score":0.009895861,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05997035393320936,"score_gpt":0.2846016643878677,"score_spread":0.2246313104546583,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}