{"id":"W2159748604","doi":"10.1093/molbev/msq311","title":"Plasmodium falciparum Genetic Diversity Maintained and Amplified Over 5 Years of a Low Transmission Endemic in the Peruvian Amazon","year":2010,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Malaria Research and Control","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"Fogarty International Center; Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Howard Hughes Medical Institute","keywords":"Biology; Haplotype; Genetic diversity; Amazon rainforest; Plasmodium falciparum; Population; Evolutionary biology; Genetic structure; Genetics; Microsatellite; Genetic variation; Malaria; Transmission (telecommunications); Allele; Demography; Ecology; Immunology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007011888,0.0001883172,0.0002904625,0.0008821237,0.0005731089,0.0006078638,0.0003006086,0.0003235087,0.0005542838],"category_scores_gemma":[0.002803903,0.0002275318,0.0001904625,0.0007395659,0.0006602102,0.0003246896,0.0005266921,0.0003764078,0.0000842783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000521983,"about_ca_system_score_gemma":0.000238602,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008863359,"about_ca_topic_score_gemma":0.00974968,"domain_scores_codex":[0.9994917,0.0002383052,0.00002575973,0.0001031457,0.00005916778,0.00008189282],"domain_scores_gemma":[0.9988546,0.0002368919,0.0005192315,0.00006833659,0.0001955778,0.000125235],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002645716,0.0000574081,0.9806746,0.00002833364,0.0001211161,0.0005584249,0.003283028,0.0002268312,0.01032222,0.00006146527,0.00009912761,0.004302783],"study_design_scores_gemma":[0.00000403064,0.00009777208,0.998955,0.000003714481,0.00001681238,0.0001881555,0.0003180912,0.0001946883,0.00008555823,0.00001619076,0.0001157039,0.000004279788],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999769,0.00005544401,0.00003953534,0.00001597334,3.027723e-7,0.000002327915,0.0000405942,0.000002072504,0.00007474153],"genre_scores_gemma":[0.9998036,0.00002313831,0.0000455542,0.000006399257,0.000001644749,0.000004385396,0.00007703244,9.252888e-7,0.00003735615],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008863359,"threshold_uncertainty_score":0.01762354,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006268919926825129,"score_gpt":0.2529883678100972,"score_spread":0.2467194478832721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}