{"id":"W2159757193","doi":"10.1093/gbe/evu260","title":"Genome-Wide Patterns of Recombination in the Opportunistic Human Pathogen Pseudomonas aeruginosa","year":2014,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; Ontario Genomics; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Homologous recombination; Genetics; Pseudomonas aeruginosa; Recombination; Genome; Virulence; Gene; Recombinase; Genetic recombination; Phylogenetic tree; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003404462,0.0001103139,0.0002062122,0.0008001941,0.0002202478,0.0003236354,0.0001447051,0.0003724179,0.0005645326],"category_scores_gemma":[0.00119874,0.0001211555,0.0002082499,0.0007938981,0.000200539,0.000150199,0.0002638637,0.0003891718,0.0001257158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009963896,"about_ca_system_score_gemma":0.00007211515,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007352256,"about_ca_topic_score_gemma":0.0009850031,"domain_scores_codex":[0.9996051,0.0001230154,0.00002864561,0.0001252124,0.00006863923,0.00004945252],"domain_scores_gemma":[0.9989263,0.0003614181,0.0004139577,0.0001006233,0.0001136034,0.00008403094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001125776,0.0001029601,0.6240302,0.0001852154,0.000513378,0.000467088,0.001022929,0.00100158,0.3520074,0.0002554777,0.0002524623,0.01903556],"study_design_scores_gemma":[0.000006389252,0.00008134442,0.9953154,0.000006526699,0.00003650107,0.0006496033,0.0001657422,0.0004821506,0.002770688,0.00008345168,0.0003951072,0.000007107104],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987733,0.0004670184,0.0003375928,0.0000230231,0.000001170218,0.000003825983,0.0002199789,0.000006069716,0.0001679431],"genre_scores_gemma":[0.9990273,0.0001296596,0.000373047,0.00001610045,0.000002518495,0.000004132839,0.0003654631,0.000003756094,0.00007817492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008001941,"threshold_uncertainty_score":0.001888573,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01120580725261624,"score_gpt":0.2452027227180212,"score_spread":0.2339969154654049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}