{"id":"W2159817785","doi":"10.1177/0300985813511131","title":"Horizontally Transferred Genetic Elements and Their Role in Pathogenesis of Bacterial Disease","year":2013,"lang":"en","type":"review","venue":"Veterinary Pathology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":241,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Virulence; Prophage; Biology; Pathogenicity island; Microbiology; Plasmid; Gene; Escherichia coli; Pathogenesis; Clostridium perfringens; Salmonella; Bacterial genome size; Bacteria; Genetics; Genome; Mobile genetic elements; Bacteriophage; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003954291,0.0007855735,0.001036902,0.002541019,0.000252408,0.000782571,0.0005638551,0.0009432449,0.002883608],"category_scores_gemma":[0.00053071,0.0002183719,0.0003654828,0.002339632,0.0005783419,0.001016146,0.0006331441,0.00101565,0.001445684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004667696,"about_ca_system_score_gemma":0.00110022,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001056402,"about_ca_topic_score_gemma":0.001430193,"domain_scores_codex":[0.9998075,0.00003060772,0.00002883996,0.0000295684,0.00008609775,0.00001743493],"domain_scores_gemma":[0.9996966,0.0001449917,0.00005847862,0.000007746955,0.00006653929,0.00002570147],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003949207,0.00004614489,0.0003867553,0.01198143,0.00005930502,0.0003660916,0.0001038772,0.0002812629,0.002826721,0.002750836,0.01050474,0.9706534],"study_design_scores_gemma":[0.000007172858,0.00008128824,0.001902663,0.00469278,0.00009312227,0.00339951,0.0001524187,0.00006327179,0.0008269692,0.001925481,0.9868342,0.00002098876],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001372747,0.9989319,0.000111645,0.000124088,0.0001039573,0.000002289879,0.000008477617,0.000004408893,0.0005759982],"genre_scores_gemma":[0.0006168963,0.9987319,0.0001611207,0.00005505115,0.00008409843,0.000002626897,0.00001746875,7.64906e-7,0.0003300113],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002883608,"threshold_uncertainty_score":0.009646654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06175676062570786,"score_gpt":0.276871132482586,"score_spread":0.2151143718568782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}