{"id":"W2159877077","doi":"10.1128/iai.01791-14","title":"Origins of a 350-Kilobase Genomic Duplication in Mycobacterium tuberculosis and Its Impact on Virulence","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Gene duplication; Biology; Virulence; Mycobacterium tuberculosis; Genetics; Genome; Lineage (genetic); Tuberculosis; Gene; Virology; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000201432,0.0002116465,0.0002044244,0.0003026238,0.0001890325,0.0002926993,0.0001858451,0.0003729762,0.0006681071],"category_scores_gemma":[0.0003307135,0.0001427401,0.0002252348,0.0002283858,0.0002425421,0.000253882,0.0003634471,0.0004001521,0.0002751243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003483812,"about_ca_system_score_gemma":0.0002148748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006608294,"about_ca_topic_score_gemma":0.001090806,"domain_scores_codex":[0.9998682,0.00002639969,0.000009733283,0.00003136063,0.00003733705,0.00002702594],"domain_scores_gemma":[0.9998277,0.00004396106,0.00005039377,0.00002467653,0.00001909213,0.00003413389],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001994766,0.00002832195,0.0176639,0.00006379097,0.00001945003,0.001042628,0.0001140711,0.0003957568,0.9738167,0.0002411778,0.00002440825,0.006390414],"study_design_scores_gemma":[0.00004425972,0.0011726,0.56944,0.00008638889,0.0001584271,0.01437421,0.000749668,0.005132181,0.3985665,0.0006505419,0.009571001,0.0000541608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997985,0.0007467183,0.0007098493,0.00004636972,0.000005882624,0.000005345912,0.00006129606,0.0000126449,0.000426808],"genre_scores_gemma":[0.9982931,0.0002833046,0.0008642492,0.00003448534,0.000006213713,0.000004252509,0.0001482486,0.000005892482,0.0003602028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006681071,"threshold_uncertainty_score":0.002527654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.021071183296636,"score_gpt":0.3403595464765966,"score_spread":0.3192883631799606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}