{"id":"W2159993252","doi":"10.1128/aem.03730-14","title":"Complex Population Structure of Borrelia burgdorferi in Southeastern and South Central Canada as Revealed by Phylogeographic Analysis","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Université de Montréal","funders":"","keywords":"Multilocus sequence typing; Phylogeography; Lyme disease; Borrelia burgdorferi; Geography; Ixodes scapularis; Population genetics; Biology; Tick; Ecology; Population; Zoology; Ixodidae; Phylogenetics; Demography; Genetics; Genotype; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004185411,0.0002014489,0.000421563,0.0001146464,0.0000760106,0.000004447873,0.0000785162,0.0001901261,0.0002802719],"category_scores_gemma":[0.000004682282,0.0001891726,0.00004527312,0.0001068204,0.0002983397,0.00001517008,0.00007299316,0.0001373871,0.00000338195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003303934,"about_ca_system_score_gemma":0.00001174043,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.07367987,"about_ca_topic_score_gemma":0.06022357,"domain_scores_codex":[0.9989169,0.0001105157,0.0002763813,0.0003673706,0.00001646958,0.0003123627],"domain_scores_gemma":[0.9996199,0.00004459513,0.000138682,0.0001559673,0.000002349128,0.00003851929],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003898981,0.00002470862,0.5051607,0.000006833463,0.0001504813,2.685939e-7,0.00008237456,0.00001929968,0.4941944,0.00003306996,0.00003302855,0.0002558908],"study_design_scores_gemma":[0.001084143,0.00007273454,0.9919211,0.000003663822,0.0002021197,0.00002407931,0.0003097579,0.000009177825,0.005463705,0.00008489442,0.0006262656,0.0001983699],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980022,0.0006682642,0.00002089317,0.00002046122,0.00006229482,0.000170563,0.001015118,0.00001022263,0.00003003801],"genre_scores_gemma":[0.9967613,0.00003116413,0.00001110508,0.0001958681,0.000008521613,0.00000475291,0.002957276,0.00001134569,0.00001868335],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4887307,"threshold_uncertainty_score":0.9569249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002005132263050313,"score_gpt":0.1563871453453226,"score_spread":0.1543820130822723,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}