{"id":"W2159993252","doi":"10.1128/aem.03730-14","title":"Complex Population Structure of Borrelia burgdorferi in Southeastern and South Central Canada as Revealed by Phylogeographic Analysis","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Université de Montréal","funders":"","keywords":"Multilocus sequence typing; Phylogeography; Lyme disease; Borrelia burgdorferi; Geography; Ixodes scapularis; Population genetics; Biology; Tick; Ecology; Population; Zoology; Ixodidae; Phylogenetics; Demography; Genetics; Genotype; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004298425,0.0002679568,0.0003736002,0.002891937,0.00215826,0.001273804,0.0006958523,0.0002697828,0.001004106],"category_scores_gemma":[0.001303939,0.0002369217,0.0003381378,0.004404799,0.0009513425,0.0001920954,0.0006396628,0.0003311987,0.0000962152],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01704987,"about_ca_system_score_gemma":0.018769,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9949802,"about_ca_topic_score_gemma":0.9966896,"domain_scores_codex":[0.9994861,0.00003556565,0.00002505891,0.0001186029,0.0001723712,0.0001623223],"domain_scores_gemma":[0.9989439,0.00008351312,0.0001339634,0.00003433109,0.0005654341,0.0002389094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001057834,0.0000205793,0.9814262,0.00002645988,0.0001070685,0.0001198582,0.00213081,0.0009393711,0.002255469,0.0003714383,0.0006094135,0.0118875],"study_design_scores_gemma":[0.000006091168,0.000008701779,0.9964057,0.00001404208,0.00002272515,0.00005283071,0.001181134,0.001316321,0.00009164029,0.00004221944,0.0008469769,0.00001157725],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979729,0.0003445632,0.0001791935,0.00007502115,0.000002346458,0.00001207176,0.0005784626,0.000008564681,0.0008268783],"genre_scores_gemma":[0.9982686,0.0002354368,0.0003205564,0.00002851242,0.000001104958,0.00000753221,0.000734453,0.000004367336,0.0003994774],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01704987,"threshold_uncertainty_score":0.123706,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002005132263050313,"score_gpt":0.1563871453453226,"score_spread":0.1543820130822723,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}