{"id":"W2160025165","doi":"10.1086/341068","title":"Genomic Deletions Suggest a Phylogeny for the<i>Mycobacterium tuberculosis</i>Complex","year":2002,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":240,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genetics; Mycobacterium tuberculosis; Tuberculosis; Mycobacterium tuberculosis complex; Genotype; Phylogenetics; Molecular epidemiology; Subspecies; Gene; Zoology; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002634595,0.0002025747,0.0002379835,0.000575889,0.0004351081,0.0007884041,0.0002716983,0.0004853929,0.001225628],"category_scores_gemma":[0.0009838045,0.0001718789,0.0001333569,0.0004589692,0.000433403,0.0005419057,0.0002986154,0.0007428657,0.0005125593],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002942547,"about_ca_system_score_gemma":0.0002063872,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00185256,"about_ca_topic_score_gemma":0.001485176,"domain_scores_codex":[0.9997955,0.00004555743,0.0000202467,0.00006288863,0.000033971,0.00004181809],"domain_scores_gemma":[0.9993814,0.0001662592,0.000221796,0.00006474755,0.00008595065,0.00007980736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000580108,0.00007996085,0.4446918,0.0001868873,0.0000704523,0.0006454671,0.00161189,0.001885836,0.5271158,0.001356564,0.0004651165,0.02131019],"study_design_scores_gemma":[0.00004201774,0.0003667941,0.9581247,0.0001234105,0.00009795707,0.004881887,0.001211885,0.003776429,0.01592223,0.001868881,0.01354681,0.00003704829],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932283,0.00115062,0.003401208,0.0002629721,0.000006760426,0.00002273594,0.0002281613,0.00003054698,0.001668714],"genre_scores_gemma":[0.9954461,0.0004948715,0.002936597,0.0001651218,0.00001290516,0.000009326069,0.0006734317,0.0000149527,0.0002467479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00185256,"threshold_uncertainty_score":0.004100084,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0337414836065039,"score_gpt":0.3020258822730207,"score_spread":0.2682843986665168,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}