{"id":"W2160034397","doi":"10.1186/gb-2013-14-2-r11","title":"Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling","year":2013,"lang":"en","type":"article","venue":"Genome biology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":315,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; McGill University; Simon Fraser University; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"Biotechnology and Biological Sciences Research Council; Chang Gung Medical Foundation; Science Foundation Ireland; Broad Institute; Natural Sciences and Engineering Research Council of Canada; Universität Wien","keywords":"Biology; Multicellular organism; Genome; Horizontal gene transfer; Gene; Evolutionary biology; Genetics; Lineage (genetic)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007867776,0.0003151147,0.0002503256,0.0006131975,0.0004599493,0.0003542159,0.0001859883,0.0003133006,0.001031878],"category_scores_gemma":[0.0002782245,0.0001397476,0.0003761343,0.0007592823,0.0001987066,0.0002159031,0.0003253431,0.0004033413,0.0004047486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003758252,"about_ca_system_score_gemma":0.0005703304,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006539042,"about_ca_topic_score_gemma":0.01444157,"domain_scores_codex":[0.999912,0.000005793647,0.000003426614,0.00002966742,0.00002902985,0.00002002274],"domain_scores_gemma":[0.9998529,0.00003348461,0.00003482938,0.00001648386,0.0000283879,0.00003393341],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002023166,0.00003130387,0.01233925,0.0004532205,0.00005145361,0.0004185711,0.0002906412,0.0005190526,0.9694647,0.0003214137,0.0004482602,0.01545979],"study_design_scores_gemma":[0.00003305458,0.0002897295,0.7768113,0.0001665925,0.0003095851,0.002584709,0.001018482,0.004278557,0.1609794,0.001555449,0.05191961,0.00005359422],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9797632,0.003269294,0.006019635,0.0002057075,0.00003016753,0.00003119246,0.007033523,0.0004184163,0.003228964],"genre_scores_gemma":[0.9647583,0.001812988,0.01232094,0.0001579082,0.00002150122,0.0000379985,0.01921199,0.0001430754,0.001535365],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006539042,"threshold_uncertainty_score":0.01300198,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01116664587266437,"score_gpt":0.2306150627881087,"score_spread":0.2194484169154443,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}