{"id":"W2160219419","doi":"10.1093/nar/gkt394","title":"IslandViewer update: improved genomic island discovery and visualization","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Dalhousie University","funders":"Genome Canada; Canadian Institutes of Health Research; Genome British Columbia; SFU Community Trust Endowment Fund; Simon Fraser University; Michael Smith Health Research BC","keywords":"Genome; Biology; Upload; Annotation; Computational biology; ENCODE; Visualization; Genome browser; Virulence; Gene; Genomic island; Genomics; Genetics; Computer science; Data mining; World Wide Web","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004055521,0.00256142,0.002761632,0.003414727,0.0008237106,0.003894528,0.005976547,0.001968642,0.07598341],"category_scores_gemma":[0.008649218,0.002286331,0.002249227,0.002482554,0.0003925567,0.004379242,0.003629359,0.00468047,0.03309386],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006853986,"about_ca_system_score_gemma":0.001790661,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005952734,"about_ca_topic_score_gemma":0.00829032,"domain_scores_codex":[0.9985225,0.0002435103,0.0001120852,0.0002542138,0.0006918538,0.0001759052],"domain_scores_gemma":[0.9966645,0.001129287,0.0001744935,0.0008407964,0.0007930653,0.0003977987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00121451,0.0002190229,0.002946784,0.001104226,0.0003754056,0.000415298,0.0004229974,0.003248318,0.02560065,0.004316387,0.6982685,0.2618678],"study_design_scores_gemma":[0.0008315655,0.0001803978,0.005880131,0.0003526576,0.0002287132,0.001177546,0.0001427596,0.1122117,0.05315429,0.009105701,0.8161777,0.0005566928],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.006134372,0.001342773,0.3104639,0.0007143557,0.0008989779,0.0002999273,0.04790445,0.6260638,0.006177431],"genre_scores_gemma":[0.02675737,0.00145403,0.6700463,0.0006920898,0.0003174511,0.001023475,0.1764464,0.1063157,0.01694723],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.07598341,"threshold_uncertainty_score":0.2541898,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01763936832012315,"score_gpt":0.3007132121858329,"score_spread":0.2830738438657097,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}