{"id":"W2160331596","doi":"10.1093/hmg/ddi420","title":"Mapping common regulatory variants to human haplotypes","year":2005,"lang":"en","type":"article","venue":"Human Molecular Genetics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre","funders":"Canadian Institutes of Health Research; Genome Canada; Burroughs Wellcome Fund","keywords":"Biology; International HapMap Project; Haplotype; Genetics; Allele; Gene; Single-nucleotide polymorphism; Phenotype; Expression quantitative trait loci; Genetic variation; Genetic association; Computational biology; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003565177,0.0002634665,0.0002785623,0.0001159364,0.0002933223,0.00003445714,0.0003985647,0.000274549,0.00006792995],"category_scores_gemma":[0.00005421109,0.0003015732,0.0001414664,0.0001327199,0.00007993604,0.00000235767,0.0002774704,0.0001304127,0.0001099556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004397164,"about_ca_system_score_gemma":0.00004270652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002183822,"about_ca_topic_score_gemma":0.0001469056,"domain_scores_codex":[0.9981241,0.0001710464,0.0004598036,0.0005535525,0.0001909,0.000500659],"domain_scores_gemma":[0.9987191,0.000008564441,0.0001388558,0.0008131587,0.0001084917,0.0002118062],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000005406086,0.00007822715,0.01654871,0.00000735557,0.00008760846,0.000005441177,0.0001239712,0.002857894,0.9703907,0.0006307036,0.006737196,0.002526839],"study_design_scores_gemma":[0.000798919,0.0005145529,0.792904,0.00002377298,0.00004903804,0.00002345489,0.0001011538,0.000199243,0.08426029,0.001604471,0.1187301,0.0007910272],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880312,0.0008671987,0.00650213,0.0004161814,0.00009198326,0.0002806557,0.00001167951,0.00003510016,0.003763846],"genre_scores_gemma":[0.9850818,0.0000336632,0.01077061,0.002298017,0.0004387695,0.00003410404,0.0001557827,0.00006493065,0.001122354],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8861303,"threshold_uncertainty_score":0.9999436,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01906071447286226,"score_gpt":0.2856030538099209,"score_spread":0.2665423393370586,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}