{"id":"W2160573460","doi":"10.1016/j.tig.2004.04.012","title":"BlastDigester – a web-based program for efficient CAPS marker design","year":2004,"lang":"en","type":"review","venue":"Trends in Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Biology; Indel; Genetics; Single-nucleotide polymorphism; Genotyping; Primer (cosmetics); Cleaved amplified polymorphic sequence; Restriction enzyme; INDEL Mutation; Endonuclease; Computational biology; Polymerase chain reaction; Restriction fragment length polymorphism; DNA; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001899507,0.002985082,0.003292134,0.002459764,0.0005162538,0.001821962,0.002965881,0.001335757,0.01037175],"category_scores_gemma":[0.001457357,0.001399624,0.001104193,0.002913141,0.0005018206,0.001084171,0.0009225145,0.003069043,0.01601183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005849883,"about_ca_system_score_gemma":0.0006389782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009763862,"about_ca_topic_score_gemma":0.001174628,"domain_scores_codex":[0.9992564,0.0001430704,0.00006746607,0.0001430746,0.0003428289,0.0000471514],"domain_scores_gemma":[0.9992548,0.0003484322,0.0000898822,0.00007547648,0.0001703098,0.00006108379],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000597649,0.0001840705,0.0006055468,0.004320195,0.0002545321,0.0003086626,0.00008997483,0.002771772,0.1188722,0.002979199,0.0610966,0.8079197],"study_design_scores_gemma":[0.0003098009,0.0002585057,0.002233332,0.0005894222,0.000290996,0.001837302,0.00006441808,0.01291636,0.1628861,0.005647595,0.8128111,0.0001549994],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01387518,0.1298569,0.7509173,0.001508359,0.001501766,0.0008189296,0.008659984,0.07305638,0.01980517],"genre_scores_gemma":[0.02293026,0.07031956,0.8532649,0.0009074112,0.000402247,0.001228026,0.02729459,0.004167262,0.01948574],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01037175,"threshold_uncertainty_score":0.03469694,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04929128546525852,"score_gpt":0.3367169040856928,"score_spread":0.2874256186204343,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}