{"id":"W2160581770","doi":"10.1128/aem.03067-12","title":"Genetic Relationships of Vibrio parahaemolyticus Isolates from Clinical, Human Carrier, and Environmental Sources in Thailand, Determined by Multilocus Sequence Analysis","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Vibrio parahaemolyticus; Biology; Multilocus sequence typing; Horizontal gene transfer; Genetic diversity; Shrimp; Genetics; Vibrio; Phylogenetic tree; Population; Locus (genetics); Microbiology; Genotype; Gene; Bacteria; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001051453,0.0001996063,0.0003551643,0.00005472452,0.0001054753,0.00001492349,0.000118969,0.0002132849,0.00005951503],"category_scores_gemma":[0.000009994726,0.0001809845,0.00006101545,0.00003874343,0.0008722659,0.000006464682,0.0002884787,0.0001367224,0.000006519394],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001800928,"about_ca_system_score_gemma":0.000005216546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003213903,"about_ca_topic_score_gemma":0.0001378535,"domain_scores_codex":[0.9986712,0.0001247223,0.0003951909,0.0005183943,0.00003474576,0.0002557427],"domain_scores_gemma":[0.9994817,0.0000712594,0.0001268132,0.0002299735,0.000001738809,0.00008855012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001965458,0.00004420502,0.3990233,0.000002633023,0.0001469371,6.07946e-7,0.0000711748,0.000005387733,0.600165,3.231957e-7,0.00002832437,0.0004924702],"study_design_scores_gemma":[0.001428011,0.0002921881,0.8523913,0.000005092701,0.0001449813,0.000009004032,0.0008211086,0.0001383041,0.1437816,0.00005891782,0.000610451,0.0003190501],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970775,0.001921194,0.00003089992,0.00002122351,0.00001168223,0.0002864031,0.0006336727,0.000003534828,0.00001388082],"genre_scores_gemma":[0.9966395,0.001602398,0.0002979641,0.00004831018,0.00002443049,0.00004543843,0.001264955,0.00001401667,0.00006302078],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4563834,"threshold_uncertainty_score":0.7380332,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358391817164683,"score_gpt":0.2407548752996427,"score_spread":0.2271709571279959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}