{"id":"W2160592359","doi":"10.1111/j.1462-2920.2011.02510.x","title":"Genetic differentiation, recombination and clonal expansion in environmental populations of <i>Cryptococcus gattii</i> in India","year":2011,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Government of Ontario; Natural Sciences and Engineering Research Council of Canada; Indian National Science Academy","keywords":"Biology; Cryptococcus gattii; Population; Multilocus sequence typing; Host (biology); Genetic diversity; Cryptococcus neoformans; Population genetics; Mating type; Cryptococcus; Ecology; Zoology; Genotype; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001878644,0.0001822347,0.0002339707,0.001545441,0.0005453164,0.0007648829,0.0002516881,0.0002054211,0.0003956765],"category_scores_gemma":[0.0004338411,0.0001936756,0.0001857741,0.001353957,0.0004645953,0.0001378972,0.0003874876,0.0002750448,0.0001069052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003781226,"about_ca_system_score_gemma":0.0003029151,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009439124,"about_ca_topic_score_gemma":0.01405938,"domain_scores_codex":[0.9996501,0.00005423234,0.00003338392,0.00009342409,0.00006770372,0.0001011633],"domain_scores_gemma":[0.9995351,0.0001049869,0.0001619507,0.00004039122,0.00009134902,0.00006623771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006944003,0.0001635509,0.7210163,0.000122469,0.00009148942,0.00190764,0.005405804,0.0005320931,0.2512792,0.0003075906,0.0001594005,0.01832001],"study_design_scores_gemma":[0.00001281818,0.0002331419,0.9857841,0.00001906462,0.00005036784,0.002265321,0.002577655,0.0003341773,0.007748051,0.00006976601,0.0008851794,0.00002031047],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995036,0.0000477588,0.0001032057,0.000006238609,0.000001373302,0.000006860206,0.00005136144,0.000002288486,0.000277207],"genre_scores_gemma":[0.999369,0.00008950257,0.0002493589,0.000009967441,0.000002296728,0.000005234425,0.0001644575,0.000001950631,0.0001082766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009439124,"threshold_uncertainty_score":0.01876831,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01390716932190681,"score_gpt":0.2112665219476606,"score_spread":0.1973593526257538,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}