{"id":"W2160605328","doi":"10.1128/jb.187.12.4050-4063.2005","title":"Catabolism of Benzoate and Phthalate in <i>Rhodococcus</i> sp. Strain RHA1: Redundancies and Convergence","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Genome Canada","keywords":"Biology; Rhodococcus; Catabolism; Biochemistry; Gene; Mutant; Enzyme; Phthalate; Plasmid; Genetics; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001817031,0.0006772217,0.0005473137,0.0004551126,0.0001687295,0.0007113182,0.0003646535,0.000396672,0.0003462762],"category_scores_gemma":[0.0003277374,0.0003520372,0.0004877453,0.0003749552,0.0002373296,0.0003290724,0.0005049327,0.000536843,0.0006061936],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004675474,"about_ca_system_score_gemma":0.0003862031,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002610018,"about_ca_topic_score_gemma":0.002410566,"domain_scores_codex":[0.9996905,0.00003855642,0.00003992986,0.00007857157,0.00008912008,0.00006324999],"domain_scores_gemma":[0.9996299,0.00004797753,0.0001469944,0.000054875,0.00006581195,0.00005446681],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005911368,0.00002032343,0.001586001,0.00003295061,0.000009917808,0.00008070733,0.00003598505,0.00005041936,0.996596,0.00002675539,0.00001033206,0.001491443],"study_design_scores_gemma":[0.00002368354,0.0003588005,0.08329699,0.00002486968,0.00009616087,0.002417692,0.0004636431,0.00199591,0.9089721,0.0001086655,0.002205396,0.00003619712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979753,0.0004246907,0.0006318085,0.00005825297,0.00000314736,0.00001270506,0.0003127609,0.00003975402,0.0005416704],"genre_scores_gemma":[0.9934401,0.0004265592,0.003314498,0.00006617307,0.000005088568,0.00003671646,0.001737729,0.00006361545,0.0009095554],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002610018,"threshold_uncertainty_score":0.005189657,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00617959316817609,"score_gpt":0.2232548866825965,"score_spread":0.2170752935144204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}