{"id":"W2160605328","doi":"10.1128/jb.187.12.4050-4063.2005","title":"Catabolism of Benzoate and Phthalate in <i>Rhodococcus</i> sp. Strain RHA1: Redundancies and Convergence","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Genome Canada","keywords":"Biology; Rhodococcus; Catabolism; Biochemistry; Gene; Mutant; Enzyme; Phthalate; Plasmid; Genetics; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002891393,0.00008246206,0.0002146247,0.00006451349,0.00001229312,0.000005573773,0.00006060566,0.0000916302,0.000007231414],"category_scores_gemma":[0.00006052182,0.00007042371,0.00002870261,0.00004064321,0.0001014807,0.000008452846,0.00003419521,0.00009660355,2.726627e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000429519,"about_ca_system_score_gemma":0.00002851889,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001302232,"about_ca_topic_score_gemma":0.00001203664,"domain_scores_codex":[0.9993944,0.00004159121,0.0003058251,0.0001143476,0.00003092976,0.0001129293],"domain_scores_gemma":[0.9996423,0.000004314299,0.0001748799,0.00007954599,0.00005665557,0.00004228597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006614169,0.00001696305,0.003306332,0.00001959894,0.00001743391,0.000001916332,0.00009326233,0.00005383015,0.9920288,0.00002728607,0.00007622274,0.004292208],"study_design_scores_gemma":[0.001078494,0.0004704912,0.2473394,0.00005513913,0.00002888402,0.00117414,0.00008073566,0.00002537911,0.685559,0.00005629041,0.06394529,0.0001868292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962063,0.003132116,0.0000727089,0.0002955954,0.0002218779,0.00003808738,0.00001552617,0.000001243894,0.00001656772],"genre_scores_gemma":[0.9956793,0.002691055,0.001200549,0.00004898559,0.0003158829,5.450372e-7,0.000005239056,0.000005798077,0.0000526745],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3064699,"threshold_uncertainty_score":0.2871795,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00617959316817609,"score_gpt":0.2232548866825965,"score_spread":0.2170752935144204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}