{"id":"W2160615485","doi":"10.1093/bioinformatics/bti120","title":"A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns","year":2004,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Java; Visualization; Computer science; Computational biology; Expression (computer science); Web application; Gene expression; Computer graphics (images); Gene; Biology; Anatomy; Programming language; World Wide Web; Data mining; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001151181,0.0001012762,0.0001246304,0.00004525647,0.0000480901,0.00001475979,0.00007878344,0.0001525401,0.000003308782],"category_scores_gemma":[0.0001461365,0.00007595257,0.00003643129,0.00005437133,0.00006313033,0.000005681098,0.00004631397,0.00002748179,5.442144e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001245763,"about_ca_system_score_gemma":0.0001081837,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003193208,"about_ca_topic_score_gemma":0.000008141296,"domain_scores_codex":[0.9993829,0.000009946829,0.0002680083,0.0001020479,0.00009876511,0.0001384028],"domain_scores_gemma":[0.9996427,0.0000122861,0.0001075166,0.0001476,0.00005295676,0.00003690011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00022127,0.00008278267,0.0009949012,0.0008950926,0.00002890864,9.937385e-7,0.000250419,0.00008696125,0.9767658,0.00005304846,0.0001132423,0.02050657],"study_design_scores_gemma":[0.00563388,0.001539741,0.002393025,0.0006191714,0.00003607916,0.00001356689,0.0004708749,0.04842254,0.9331043,0.0000787009,0.007243799,0.0004443701],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7342718,0.00008158858,0.2652057,0.00003605773,0.00003018554,0.0002898651,0.00005281016,0.00001653929,0.00001545885],"genre_scores_gemma":[0.8955738,0.00004290052,0.1039892,0.0001084808,0.00001997853,0.0000405004,0.0001868402,0.000009509266,0.00002879125],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.161302,"threshold_uncertainty_score":0.3097256,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01197447371047431,"score_gpt":0.2844673868023079,"score_spread":0.2724929130918335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}