{"id":"W2160838716","doi":"10.1101/gr.185579.114","title":"The Release 6 reference sequence of the <i>Drosophila melanogaster</i> genome","year":2015,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":576,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; National Institutes of Health; Istituto Pasteur-Fondazione Cenci Bolognetti; Ministerio de Economía y Competitividad; U.S. Department of Energy; Howard Hughes Medical Institute","keywords":"Biology; Reference genome; Genetics; Contig; Genome; Sequence assembly; Genome project; Computational biology; Positional cloning; Bacterial artificial chromosome; Gene; Locus (genetics)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008688498,0.001300303,0.0008724419,0.002076574,0.0007990836,0.0009634523,0.001164013,0.0009696498,0.01444633],"category_scores_gemma":[0.001879899,0.0005426327,0.0007565104,0.002259386,0.0002839321,0.0005457841,0.0005689006,0.001470532,0.02285432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008499208,"about_ca_system_score_gemma":0.001782629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007566062,"about_ca_topic_score_gemma":0.01079292,"domain_scores_codex":[0.9993217,0.000101955,0.0001130228,0.0001491139,0.0002458981,0.000068331],"domain_scores_gemma":[0.9987651,0.0001106828,0.0002128613,0.000221647,0.0005766178,0.0001130365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002690433,0.0001729073,0.003877132,0.003158154,0.0001398973,0.001019563,0.0004743427,0.001546007,0.5880318,0.004169742,0.1904045,0.2043155],"study_design_scores_gemma":[0.0001514025,0.000522273,0.01595423,0.0003379605,0.0001540218,0.0008967832,0.00009991529,0.0009193053,0.06739034,0.0005437147,0.9129446,0.00008538306],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.08162267,0.01306867,0.09439456,0.00155036,0.002804248,0.0015192,0.7474042,0.009384144,0.04825202],"genre_scores_gemma":[0.01960187,0.002704916,0.06150836,0.000459221,0.0001425076,0.0005518118,0.8973403,0.001005395,0.01668555],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.01444633,"threshold_uncertainty_score":0.04832774,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1332856756943138,"score_gpt":0.3451502554487031,"score_spread":0.2118645797543893,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}