{"id":"W2160838716","doi":"10.1101/gr.185579.114","title":"The Release 6 reference sequence of the <i>Drosophila melanogaster</i> genome","year":2015,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":576,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; National Institutes of Health; Istituto Pasteur-Fondazione Cenci Bolognetti; Ministerio de Economía y Competitividad; U.S. Department of Energy; Howard Hughes Medical Institute","keywords":"Biology; Reference genome; Genetics; Contig; Genome; Sequence assembly; Genome project; Computational biology; Positional cloning; Bacterial artificial chromosome; Gene; Locus (genetics)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001366623,0.0001175964,0.0001206139,0.00002783765,0.0003512359,0.0000360833,0.0009329672,0.00008321312,0.000004841262],"category_scores_gemma":[0.0002208234,0.00006927519,0.00006792726,0.0002221195,0.0005790803,6.353423e-7,0.0008956541,0.0002167931,0.00002504484],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003457663,"about_ca_system_score_gemma":0.0003373123,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007873894,"about_ca_topic_score_gemma":0.00006766447,"domain_scores_codex":[0.9982941,0.0002823976,0.0002184838,0.0003040967,0.0004488666,0.000452098],"domain_scores_gemma":[0.9983708,0.00005488761,0.00007033392,0.0008981237,0.0004761882,0.0001297022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006999049,0.00001969168,0.001015981,0.00001061691,0.00004022037,0.000001563212,0.0001622628,0.00009874786,0.9970917,0.0004353714,0.0003816221,0.0006722501],"study_design_scores_gemma":[0.0006043332,0.0006360552,0.02032716,0.00001208036,0.00001508418,0.00002922596,0.000825074,0.00002016074,0.05610969,0.003567456,0.9176061,0.000247589],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9801919,0.008026659,0.00001021269,0.001120992,0.0001155038,0.0003351728,0.0001230288,0.000001648133,0.01007491],"genre_scores_gemma":[0.996016,0.001928849,0.00009727943,0.00007062181,0.000188168,0.00003907754,0.00001521496,0.00001690189,0.001627913],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.940982,"threshold_uncertainty_score":0.2824961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1332856756943138,"score_gpt":0.3451502554487031,"score_spread":0.2118645797543893,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}