{"id":"W2161003771","doi":"10.1073/pnas.1402814111","title":"Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt","year":2014,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":181,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; University of Toronto","funders":"","keywords":"Ribosome; Translation (biology); Internal ribosome entry site; RNA; Eukaryotic translation; Ribosome profiling; Circular RNA; Biology; Coding region; Genetics; Computational biology; Gene; Protein biosynthesis; 5.8S ribosomal RNA; Messenger RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001201701,0.00005238913,0.0001084504,0.00006018457,0.00007595967,0.000005432961,0.0003179798,0.00006146483,0.000001346882],"category_scores_gemma":[0.0005431522,0.00003722732,0.00004691311,0.0001733071,0.0004251677,0.00001518387,0.00007566496,0.00005393855,2.821844e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003496653,"about_ca_system_score_gemma":0.00002230614,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006408478,"about_ca_topic_score_gemma":4.038881e-8,"domain_scores_codex":[0.9989437,0.000006445148,0.0002622856,0.0001805665,0.0005192484,0.00008779763],"domain_scores_gemma":[0.9993178,0.00003635031,0.0003515637,0.00001381607,0.0002538486,0.00002660591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001802757,0.00002169549,0.003909018,0.00009749379,0.000006747572,4.112423e-10,0.0000502257,0.00003024287,0.9938039,0.00127407,0.00003195395,0.0007566545],"study_design_scores_gemma":[0.0002394199,0.0000723872,0.01482282,0.00007914963,0.000004554922,0.000002479552,0.0000414556,0.001863196,0.9819232,0.0008625412,0.00005143953,0.00003730381],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984254,0.000268402,0.0001592804,0.0003546824,0.000003221776,0.000105816,0.000009770066,0.000001319694,0.000672169],"genre_scores_gemma":[0.9946029,0.0000683468,0.005229467,0.00003736096,0.00002898262,0.000003403837,4.438746e-7,0.000002629079,0.00002652646],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01188062,"threshold_uncertainty_score":0.1566548,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04394682983053415,"score_gpt":0.3126304473275325,"score_spread":0.2686836174969983,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}