{"id":"W2161233989","doi":"10.3732/ajb.91.9.1398","title":"Phylogeny of <i>Populus</i> (Salicaceae) based on nucleotide sequences of chloroplast TRNT‐TRNF region and nuclear rDNA","year":2004,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":177,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University; Ministère des Ressources naturelles et des Forêts (Québec); Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Concordia University; Canada Foundation for Innovation","keywords":"Biology; Reticulate evolution; Chloroplast DNA; Polyphyly; Phylogenetic tree; Phylogenetics; Systematics; Intergenic region; Nuclear gene; Nuclear DNA; Evolutionary biology; Genus; Character evolution; Molecular phylogenetics; Botany; Plant evolution; Clade; Genetics; Genome; Mitochondrial DNA; Taxonomy (biology); Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015156,0.0003306826,0.0001784427,0.001005918,0.0004125338,0.0003736403,0.0001860213,0.0002088262,0.000522138],"category_scores_gemma":[0.0001931075,0.000102999,0.0002749109,0.0006070776,0.0001696217,0.0002489419,0.000236716,0.000231189,0.0002684557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002101544,"about_ca_system_score_gemma":0.0002582195,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001644325,"about_ca_topic_score_gemma":0.001748934,"domain_scores_codex":[0.9999183,0.0000191225,0.000006596785,0.00002328193,0.00001696647,0.00001577495],"domain_scores_gemma":[0.9998988,0.00001944044,0.00003180747,0.000007317657,0.0000188578,0.00002374483],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002871958,0.00004779722,0.07583063,0.000415119,0.0001632481,0.0006295659,0.001163968,0.004230202,0.8836419,0.001383306,0.0003339388,0.03187314],"study_design_scores_gemma":[0.00003700004,0.0003059766,0.9290081,0.0001703652,0.0002448824,0.002196283,0.001177365,0.01593149,0.02200385,0.001667446,0.0271823,0.00007503115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927701,0.001168421,0.003139797,0.00005279676,0.000006592553,0.00002280392,0.0005178731,0.000107681,0.002213891],"genre_scores_gemma":[0.990647,0.0006345332,0.005479591,0.00004114841,0.000006762582,0.0000185681,0.002662709,0.00003004441,0.0004797683],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001644325,"threshold_uncertainty_score":0.003269494,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006841235354272625,"score_gpt":0.2134843768091061,"score_spread":0.2066431414548335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}