{"id":"W2161283816","doi":"10.1371/journal.ppat.1004262","title":"The Semen Microbiome and Its Relationship with Local Immunology and Viral Load in HIV Infection","year":2014,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network; Maple Leaf Medical Clinic; University of Toronto","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Ontario HIV Treatment Network; Northern Arizona University","keywords":"Semen; Immunology; Biology; Viral load; Microbiome; Virology; Human immunodeficiency virus (HIV); Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005788945,0.000128662,0.0001546488,0.0001463185,0.0003972165,0.00002463194,0.00006718101,0.0001706255,0.00002199873],"category_scores_gemma":[0.0003808205,0.00009024789,0.00001804624,0.000199649,0.0004740435,0.0001132393,0.00008149877,0.000451042,0.0001763823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008541157,"about_ca_system_score_gemma":0.00005074917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000688151,"about_ca_topic_score_gemma":0.000240613,"domain_scores_codex":[0.9986583,0.0004906146,0.0001775473,0.0003310474,0.00003476904,0.0003077305],"domain_scores_gemma":[0.9991536,0.000413464,0.0000561987,0.000242158,0.0001176712,0.00001692196],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001832675,0.0001203968,0.2216193,0.00001640576,0.0001073199,0.000002554079,0.0003562436,0.00001411695,0.7708979,0.002985682,0.00004859049,0.003648237],"study_design_scores_gemma":[0.001534921,0.0005716055,0.9229639,0.00003316501,0.00004019948,0.000366274,0.0001307744,0.00009253652,0.06473754,0.0005351586,0.008780559,0.0002133901],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965123,0.001586142,0.000294843,0.0005011504,0.00008911975,0.0003207285,0.000009661864,0.00004147063,0.0006446097],"genre_scores_gemma":[0.9986971,0.0002032192,0.00002948516,0.00001692549,0.00002094316,0.00006114903,0.0000178783,0.0000141837,0.0009391329],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7061603,"threshold_uncertainty_score":0.3680202,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01510948924229273,"score_gpt":0.2408570726643122,"score_spread":0.2257475834220194,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}