{"id":"W2161283816","doi":"10.1371/journal.ppat.1004262","title":"The Semen Microbiome and Its Relationship with Local Immunology and Viral Load in HIV Infection","year":2014,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network; Maple Leaf Medical Clinic; University of Toronto","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Ontario HIV Treatment Network; Northern Arizona University","keywords":"Semen; Immunology; Biology; Viral load; Microbiome; Virology; Human immunodeficiency virus (HIV); Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006453561,0.0002051876,0.0003328072,0.0005309466,0.0003225364,0.0006398211,0.0001256727,0.0002742404,0.0007832996],"category_scores_gemma":[0.002039354,0.000194605,0.0001487797,0.0005768984,0.000387225,0.0003353578,0.0004545132,0.0003230131,0.0001048185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001733411,"about_ca_system_score_gemma":0.0001561228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008867308,"about_ca_topic_score_gemma":0.0009576369,"domain_scores_codex":[0.9996327,0.0001920487,0.00002614794,0.00005565884,0.00005554632,0.00003797826],"domain_scores_gemma":[0.9992197,0.0002411802,0.0003057801,0.0000397649,0.00008516623,0.0001084158],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002635043,0.00003681395,0.9881226,0.00003586468,0.00007542006,0.00009953008,0.0002493063,0.00028125,0.004955954,0.00004396185,0.00004134207,0.005794343],"study_design_scores_gemma":[0.000001934483,0.0001862899,0.9976298,0.00001321959,0.00002615939,0.0002787981,0.0003601906,0.0007860439,0.0005416404,0.00007830327,0.00009232532,0.000005227349],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987386,0.0009026279,0.0001646984,0.00002121333,0.000002202552,0.000003590221,0.0000428911,0.000002462125,0.0001218273],"genre_scores_gemma":[0.9994702,0.0001909915,0.0002133604,0.000009681593,0.00000480721,0.000003110246,0.00004439717,8.733284e-7,0.00006271427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008867308,"threshold_uncertainty_score":0.003413022,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01510948924229273,"score_gpt":0.2408570726643122,"score_spread":0.2257475834220194,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}