{"id":"W2161406364","doi":"10.1128/jb.186.15.5062-5077.2004","title":"The Homogentisate Pathway: a Central Catabolic Pathway Involved in the Degradation of <scp>l</scp> -Phenylalanine, <scp>l</scp> -Tyrosine, and 3-Hydroxyphenylacetate in <i>Pseudomonas putida</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":263,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Comisión Interministerial de Ciencia y Tecnología; Institute for Catastrophic Loss Reduction","keywords":"Pseudomonas putida; Biology; Biochemistry; Catabolism; Repressor; Isomerase; TetR; Gene; Enzyme; Transcription factor","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008903141,0.0002980581,0.0005079188,0.0001725336,0.00009803181,0.00005965576,0.0006112963,0.0004603899,0.000001011839],"category_scores_gemma":[0.0005681991,0.000194724,0.0001522364,0.0003018419,0.000431774,0.00001959574,0.0001917482,0.0004625182,0.000001691643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000425391,"about_ca_system_score_gemma":0.0002924853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001169844,"about_ca_topic_score_gemma":0.0009558126,"domain_scores_codex":[0.9975793,0.0003383213,0.000969087,0.0003314131,0.0001731867,0.0006086311],"domain_scores_gemma":[0.9984,0.0001810398,0.0007697836,0.0004043647,0.0001457224,0.00009909409],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005510106,0.0001589786,0.01183235,0.0000209475,0.00006254688,0.00003976898,0.0004307411,0.00007609438,0.9850777,0.0005198471,0.0001331314,0.001592768],"study_design_scores_gemma":[0.004463327,0.001936004,0.2432803,0.00009116402,0.00005304501,0.0008701284,0.001546552,0.00003056028,0.6783647,0.001644751,0.06758115,0.0001383385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951286,0.003368179,0.0001192662,0.0004887657,0.000474389,0.0002921891,0.00004748833,0.000005030605,0.00007604634],"genre_scores_gemma":[0.9934158,0.005417422,0.0004859515,0.0002669875,0.0002416735,0.00001296368,0.0000639157,0.00002741905,0.00006783017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.306713,"threshold_uncertainty_score":0.7940614,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008111262167202588,"score_gpt":0.2078396723744269,"score_spread":0.1997284102072243,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}