{"id":"W2161406364","doi":"10.1128/jb.186.15.5062-5077.2004","title":"The Homogentisate Pathway: a Central Catabolic Pathway Involved in the Degradation of <scp>l</scp> -Phenylalanine, <scp>l</scp> -Tyrosine, and 3-Hydroxyphenylacetate in <i>Pseudomonas putida</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":263,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Comisión Interministerial de Ciencia y Tecnología; Institute for Catastrophic Loss Reduction","keywords":"Pseudomonas putida; Biology; Biochemistry; Catabolism; Repressor; Isomerase; TetR; Gene; Enzyme; Transcription factor","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009051132,0.001008407,0.0005240656,0.0002940048,0.00039296,0.0005822112,0.0002602073,0.0003533331,0.001430361],"category_scores_gemma":[0.00008992648,0.0001475934,0.0003500654,0.0002731856,0.0003572478,0.0003716061,0.0005662884,0.0005022285,0.0008424725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001059027,"about_ca_system_score_gemma":0.0008571685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002720094,"about_ca_topic_score_gemma":0.003184318,"domain_scores_codex":[0.9997802,0.00001641521,0.00001187182,0.00009340666,0.00005588322,0.00004210947],"domain_scores_gemma":[0.999873,0.000008347477,0.00003485666,0.00001238767,0.00002841301,0.00004299817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005416019,0.00001364018,0.0004526598,0.00009058671,0.0000066166,0.00007837608,0.00001683438,0.00003866699,0.9954112,0.0000931763,0.00006609887,0.003677897],"study_design_scores_gemma":[0.000008982827,0.0001214913,0.009874719,0.000009567643,0.00002117492,0.0006729091,0.00004672764,0.0004990055,0.9836589,0.000112933,0.004962611,0.00001079124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9377732,0.008764737,0.03964439,0.0006487112,0.0001067213,0.0002875897,0.003099405,0.002246773,0.007428405],"genre_scores_gemma":[0.972441,0.002016614,0.01259564,0.0001308128,0.00003686361,0.00006496325,0.002919797,0.00009383551,0.00970054],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002720094,"threshold_uncertainty_score":0.007683814,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008111262167202588,"score_gpt":0.2078396723744269,"score_spread":0.1997284102072243,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}