{"id":"W2161438622","doi":"10.1093/molbev/msm235","title":"Intron Loss and Gain in Drosophila","year":2007,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canada Research Chairs","keywords":"Intron; Biology; RNA splicing; Genetics; Lineage (genetic); Drosophila melanogaster; Exon; Genome; Evolutionary biology; Splice site mutation; Gene; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004396028,0.00008496636,0.00008527728,0.00007768573,0.00005233437,0.00000656607,0.00004856755,0.0001838304,0.000001669775],"category_scores_gemma":[0.00007972967,0.0000809817,0.00001920875,0.00006656652,0.0001613992,0.000002625424,0.00007825552,0.00009715139,0.000001824293],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001495778,"about_ca_system_score_gemma":0.00001742223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000785393,"about_ca_topic_score_gemma":0.0001434256,"domain_scores_codex":[0.9992644,0.00006120723,0.0001163783,0.0002513665,0.00003650179,0.0002702083],"domain_scores_gemma":[0.9997677,0.00000916109,0.00002205264,0.0001091592,0.00002067868,0.00007129191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001052117,0.0000142906,0.09056516,0.000006256718,0.000008504017,0.00001443738,0.00001017151,0.000005382872,0.9029599,0.00413834,0.00002130218,0.002151079],"study_design_scores_gemma":[0.002582308,0.00124416,0.6382053,0.00003499305,0.00001451865,0.0001992334,0.000175651,0.0007388008,0.3397385,0.01359222,0.002948279,0.0005260089],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9731741,0.00269018,0.02350969,0.00023588,0.00003138082,0.00009146894,0.000002139583,0.000004976281,0.0002601733],"genre_scores_gemma":[0.99915,0.0001838879,0.0003219921,0.0001419959,0.00005561747,0.000004575172,0.00003846678,0.000006504878,0.00009697849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5632213,"threshold_uncertainty_score":0.3302338,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004920060543879933,"score_gpt":0.277700200487086,"score_spread":0.2727801399432061,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}