{"id":"W2161527837","doi":"10.1146/annurev-genet-120213-092421","title":"Gastrointestinal Microbiota–Mediated Control of Enteric Pathogens","year":2014,"lang":"en","type":"review","venue":"Annual Review of Genetics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Salmonella enterica; Gastrointestinal tract; Microbiology; Microbiome; Immune system; Clostridium difficile; Inflammatory bowel disease; Salmonella; Gut flora; Immunity; Immunology; Disease; Bacteria; Medicine; Antibiotics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005360958,0.0005046218,0.002464157,0.00008851042,0.00002801657,0.00000455752,0.0005493632,0.0002298952,0.00004158924],"category_scores_gemma":[0.0003046516,0.0003756163,0.000904194,0.0002017279,0.0001748761,0.00000127789,0.0001692846,0.0002171091,0.00003979204],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001925675,"about_ca_system_score_gemma":0.0005667674,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003359663,"about_ca_topic_score_gemma":0.000002788433,"domain_scores_codex":[0.9969738,0.000398695,0.001568673,0.0004929096,0.0001622522,0.0004036969],"domain_scores_gemma":[0.9971031,0.00006401852,0.001416891,0.0007978401,0.0004678071,0.0001503471],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001922312,0.0002004193,0.00004493077,0.4668901,0.0002660918,0.000007443826,0.00001014792,3.642268e-7,0.02179393,0.000007050152,0.01107956,0.4996807],"study_design_scores_gemma":[0.0002384156,0.000703004,0.00002022598,0.07752905,0.000705014,0.0002709132,0.00000354437,5.024479e-7,0.00009667198,5.038283e-7,0.9201568,0.0002753201],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00002921643,0.9959815,0.0005722379,0.00002705161,0.0001230518,0.0009772357,0.002204606,0.000005861837,0.00007929572],"genre_scores_gemma":[0.0000661673,0.9963648,0.00113821,0.0005135903,0.0001859616,0.00002498839,0.001498595,0.00007084158,0.0001368813],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9090773,"threshold_uncertainty_score":0.9998696,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01197770377541396,"score_gpt":0.3089304092140465,"score_spread":0.2969527054386325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}