{"id":"W2161588314","doi":"10.4049/jimmunol.173.11.6858","title":"Gene Expression Profiling of Host Response in Models of Acute HIV Infection","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":97,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; University of Toronto; University Health Network; Royal Victoria Hospital; McGill University Health Centre; Royal Victoria Regional Health Centre; Western University","funders":"Health Canada","keywords":"Biology; Innate immune system; Virology; Gene; CD14; Immunity; Gene expression profiling; Viral replication; Interferon; Immunology; Virus; Acquired immune system; Gene expression; Immune system; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009502075,0.00009145386,0.0003113472,0.0002816556,0.00005256597,0.000001417915,0.0002044431,0.0001481698,0.00004205625],"category_scores_gemma":[0.00009033487,0.00005577182,0.00008766489,0.0001429503,0.0002678656,0.0001036613,0.00007699875,0.0003863582,0.0000290839],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008257444,"about_ca_system_score_gemma":0.0002037838,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009856767,"about_ca_topic_score_gemma":0.000005604828,"domain_scores_codex":[0.9984658,0.0007157281,0.0004968462,0.00006598246,0.00004677592,0.0002088133],"domain_scores_gemma":[0.9990189,0.0002162685,0.0003990349,0.0002004403,0.0001545766,0.00001077757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.01290751,0.0002835486,0.001115528,0.000006025761,0.0004063113,0.00001956041,0.001003461,0.0009196407,0.9828907,0.00008136497,0.00001608333,0.0003502702],"study_design_scores_gemma":[0.003583818,0.001791623,0.01824848,0.00009132188,0.00005228907,0.0005573391,0.0001679419,0.000001606244,0.974753,0.0006819331,0.00002917544,0.00004146713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941348,0.003938504,0.001249976,0.0003115058,0.0001431196,0.0001423024,0.00002183196,0.0000037323,0.00005423814],"genre_scores_gemma":[0.9977841,0.00168595,0.0004372852,0.000007095298,0.000006891894,0.00000313194,0.000007521981,0.000006904904,0.00006113401],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01713295,"threshold_uncertainty_score":0.2274309,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01778569072762695,"score_gpt":0.2777532918755534,"score_spread":0.2599676011479264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}