{"id":"W2161670896","doi":"10.1186/1756-0500-2-159","title":"The opsin repertoire of Jenynsia onca: a new perspective on gene duplication and divergence in livebearers","year":2009,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"University of Victoria","keywords":"Opsin; Gene duplication; Poeciliidae; Biology; Gene; Gene conversion; Most recent common ancestor; Evolutionary biology; Genetics; Guppy; Phylogenetic tree; Locus control region; Rhodopsin; Gene expression; Recombination; Retinal; Botany; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004037325,0.00006365255,0.00006333597,0.00005449743,0.0001111185,0.0000217151,0.0001470279,0.00005408566,0.000003378356],"category_scores_gemma":[0.001221307,0.00004651887,0.00002434073,0.0001686904,0.0001305419,0.000003482881,0.0000619625,0.00008728684,0.000003442623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002571925,"about_ca_system_score_gemma":0.0001711946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004070319,"about_ca_topic_score_gemma":0.0002595978,"domain_scores_codex":[0.999181,0.00009162512,0.0001054523,0.0002351734,0.0002029744,0.000183747],"domain_scores_gemma":[0.9994755,0.000110327,0.00002756032,0.0001972157,0.0001382653,0.00005111141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001532574,0.0001700821,0.129857,0.00001890006,0.00002678097,0.000004454854,0.001428085,0.00008318749,0.8198335,0.006512686,0.003689718,0.03684302],"study_design_scores_gemma":[0.0005276963,0.000782571,0.8019149,0.00003746862,0.000002276929,0.000002418655,0.001404449,0.0001020285,0.1884477,0.004363777,0.002279291,0.0001354578],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931418,0.002476033,0.0001099542,0.002081326,0.00001341992,0.0002203247,0.000001213732,0.000002827665,0.001953088],"genre_scores_gemma":[0.9969619,0.001933718,0.0005295835,0.00005489621,0.00003335921,0.000007958578,0.000006980011,0.000004189689,0.0004674209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6720578,"threshold_uncertainty_score":0.1896984,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05944900589263053,"score_gpt":0.3800516369962019,"score_spread":0.3206026311035714,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}