{"id":"W2161670896","doi":"10.1186/1756-0500-2-159","title":"The opsin repertoire of Jenynsia onca: a new perspective on gene duplication and divergence in livebearers","year":2009,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"University of Victoria","keywords":"Opsin; Gene duplication; Poeciliidae; Biology; Gene; Gene conversion; Most recent common ancestor; Evolutionary biology; Genetics; Guppy; Phylogenetic tree; Locus control region; Rhodopsin; Gene expression; Recombination; Retinal; Botany; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009204812,0.0001636893,0.0002630341,0.0009861416,0.0003660352,0.0004251176,0.0002126267,0.0003016168,0.0008091222],"category_scores_gemma":[0.0001530255,0.00009168693,0.0001882408,0.0005976862,0.0004537795,0.0004699116,0.0004543876,0.0003264585,0.0001288412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002313094,"about_ca_system_score_gemma":0.0001812224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001042085,"about_ca_topic_score_gemma":0.002292883,"domain_scores_codex":[0.9999254,0.000003941764,0.000007357964,0.00002668033,0.00001910426,0.00001749959],"domain_scores_gemma":[0.9998241,0.00003520493,0.00005386762,0.00001351752,0.00003225069,0.00004101844],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001989332,0.00003038431,0.08157802,0.00009437324,0.00003188047,0.0006868901,0.0006412654,0.0001078182,0.8998335,0.0002599625,0.00003050619,0.01650636],"study_design_scores_gemma":[0.000007772634,0.0001893087,0.9706067,0.00001917973,0.00005689014,0.002253271,0.001132235,0.0004749197,0.02153089,0.0003611551,0.003348414,0.00001916798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989507,0.0002498991,0.0002565792,0.00001862581,0.000001711488,0.000001750252,0.00004593978,0.00000619242,0.0004685922],"genre_scores_gemma":[0.9986809,0.0002223644,0.0004737792,0.00002196111,0.000004740883,0.000004612769,0.0002141384,0.000005905608,0.0003716025],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001042085,"threshold_uncertainty_score":0.002706826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05944900589263053,"score_gpt":0.3800516369962019,"score_spread":0.3206026311035714,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}