{"id":"W2161861736","doi":"10.1128/jb.00296-13","title":"Effect of the Abortive Infection Mechanism and Type III Toxin/Antitoxin System AbiQ on the Lytic Cycle of Lactococcus lactis Phages","year":2013,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Siphoviridae; Lytic cycle; Myoviridae; Bacteriophage; Lactococcus lactis; Phagemid; Microbiology; Mutant; Gene; Antitoxin; Genome; Escherichia coli; Lactococcus; Lysin; Genetics; Virology; Bacteria; Virus; Toxin","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003364068,0.0001038414,0.0002683242,0.00003557514,0.00007736816,0.00001535188,0.0001462579,0.00007708462,0.0006757611],"category_scores_gemma":[0.00007411673,0.00005176395,0.0001007712,0.0001054404,0.000158428,0.0001701439,0.00008571418,0.0002103809,0.00003519868],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008073882,"about_ca_system_score_gemma":0.0000106726,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006332365,"about_ca_topic_score_gemma":0.00004400761,"domain_scores_codex":[0.9990648,0.0003058013,0.000339026,0.0000915347,0.00008131278,0.0001175012],"domain_scores_gemma":[0.9989251,0.0002633066,0.0005892418,0.0001502563,0.00003677202,0.00003530645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009915393,0.00003286629,0.002838692,0.00002263723,0.00004675639,0.000001335539,0.0001591788,0.00002264212,0.9952344,0.000121816,0.0001857256,0.001234786],"study_design_scores_gemma":[0.0004837107,0.001900453,0.6404224,0.0001479485,0.00008258234,0.0002133533,0.0001026239,0.00007333898,0.356029,0.000100162,0.0003660223,0.00007842224],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981043,0.00001379118,0.00002292839,0.0002376769,0.00074783,0.0002768688,0.00000392628,0.000003791543,0.0005888627],"genre_scores_gemma":[0.9997413,0.0000440481,0.00001701435,0.00005856802,0.00004407359,0.000005448452,2.705886e-7,0.000007224225,0.00008204349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6392055,"threshold_uncertainty_score":0.739911,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004570764929674826,"score_gpt":0.2245091086195751,"score_spread":0.2199383436899003,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}