{"id":"W2161865728","doi":"10.1128/jcm.42.8.3594-3599.2004","title":"Genomic Analysis Distinguishes <i>Mycobacterium africanum</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; Wellcome Trust; McGill University; Novartis Foundation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Mycobacterium tuberculosis; Mycobacterium tuberculosis complex; Tuberculosis; Genetics; genomic DNA; Phylogenetics; Sequence analysis; DNA; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.002730077,0.0001524015,0.001698814,0.0003015561,0.00004309615,0.00000921324,0.0002474042,0.0003139371,0.0002268402],"category_scores_gemma":[0.008768821,0.0001017813,0.001254218,0.000382122,0.0003940866,0.00003986609,0.0000912351,0.0009270775,0.00009380432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009532827,"about_ca_system_score_gemma":0.0004126425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004325507,"about_ca_topic_score_gemma":0.00003870241,"domain_scores_codex":[0.9967363,0.0004530047,0.002041945,0.0002565744,0.00006820074,0.000443904],"domain_scores_gemma":[0.9966672,0.001371294,0.0008312077,0.0002895332,0.0003969941,0.0004437505],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001683696,0.0006605785,0.862264,0.00002708306,0.004235816,0.000374754,0.00005276157,0.000117495,0.1196775,0.000161445,0.008122309,0.002622607],"study_design_scores_gemma":[0.003741503,0.003410464,0.8480289,0.00006188224,0.002006083,0.002673634,0.00004793402,0.000008789726,0.0006367094,0.0006617704,0.1385408,0.0001815501],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9851654,0.0006924929,0.0006345841,0.01186139,0.0006262409,0.00008925376,0.00002054179,0.00001241026,0.0008977148],"genre_scores_gemma":[0.9892578,0.0007507175,0.004414874,0.004070391,0.001349394,0.000001111047,0.00002136064,0.00001272825,0.0001216648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1304185,"threshold_uncertainty_score":0.9995807,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05901758583494773,"score_gpt":0.406779132883308,"score_spread":0.3477615470483603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}