{"id":"W2161983251","doi":"10.1186/1742-4690-9-62","title":"CTGC motifs within the HIV core promoter specify Tat-responsive pre-initiation complexes","year":2012,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"TATA box; Promoter; Transcription (linguistics); Biology; Transcription factor; Molecular biology; Cell biology; Gene; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001525733,0.0005759246,0.0002240858,0.0003781866,0.0002895912,0.0004104172,0.0003145522,0.0003756094,0.002521532],"category_scores_gemma":[0.0003561032,0.0003002858,0.0002556513,0.0002763033,0.0002886637,0.0002015115,0.0003189104,0.0006674283,0.001884503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006896976,"about_ca_system_score_gemma":0.0003878459,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007290415,"about_ca_topic_score_gemma":0.001206124,"domain_scores_codex":[0.999783,0.00003104238,0.00001659554,0.0000646584,0.00005752669,0.00004717008],"domain_scores_gemma":[0.9996822,0.00009459087,0.00007531702,0.00003950673,0.00005287261,0.00005547717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008911885,0.00001623823,0.0003008521,0.00004973203,0.000003149985,0.0000710838,0.00002919363,0.00007297514,0.9976138,0.0003473564,0.0001136072,0.001292979],"study_design_scores_gemma":[0.00002286562,0.0001251738,0.005454618,0.00004241899,0.00001531626,0.0007548447,0.00006023197,0.002477308,0.9815067,0.0005156989,0.009012336,0.00001257107],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9545825,0.004824254,0.0336708,0.0001545153,0.00009977639,0.0002205397,0.002289816,0.0005914933,0.003566297],"genre_scores_gemma":[0.9660196,0.0008712273,0.02267698,0.00008474413,0.00002728975,0.0001052198,0.006252763,0.0001429617,0.003819175],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002521532,"threshold_uncertainty_score":0.008435428,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03280585896375048,"score_gpt":0.2894247473983295,"score_spread":0.256618888434579,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}