{"id":"W2162002946","doi":"10.1371/journal.ppat.1002137","title":"Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens","year":2011,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":565,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Agricultural Research Service; National Institute of Food and Agriculture; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Natural Sciences and Engineering Research Council of Canada; Broad Institute; North Carolina State University; U.S. Department of Agriculture","keywords":"Verticillium dahliae; Biology; Verticillium; Verticillium wilt; Virulence; Fusarium oxysporum; Genome; Effector; Nicotiana benthamiana; Wilt disease; Comparative genomics; Periplasmic space; Microbiology; Gene; Genetics; Fusarium wilt; Genomics; Botany; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001679076,0.0002785972,0.0003381346,0.0006650391,0.0001908039,0.0003678177,0.0001985311,0.0003803451,0.0006032406],"category_scores_gemma":[0.0002661899,0.0001586318,0.0004072679,0.0007156398,0.0001309182,0.0003650485,0.0003080551,0.0004115322,0.0002445238],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002750333,"about_ca_system_score_gemma":0.0001978715,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009415895,"about_ca_topic_score_gemma":0.00118817,"domain_scores_codex":[0.9998678,0.00001626003,0.000005687408,0.00005117467,0.00002452827,0.00003447754],"domain_scores_gemma":[0.999884,0.0000356372,0.00002637539,0.00001052061,0.00001731804,0.00002623296],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001406635,0.00002063852,0.002276678,0.00008653993,0.00001780581,0.000113912,0.0001003157,0.0002896181,0.9904497,0.0002611832,0.00004807311,0.006194884],"study_design_scores_gemma":[0.00007389647,0.001174569,0.6446006,0.0001277334,0.0004312714,0.003258164,0.001379475,0.01216473,0.2982903,0.004075463,0.0343424,0.00008151396],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9868476,0.002702257,0.00581138,0.0001345908,0.00001772187,0.00001631569,0.002020328,0.00007584968,0.002373848],"genre_scores_gemma":[0.9857942,0.001937117,0.006842366,0.0001430988,0.00002284556,0.00001664345,0.004250789,0.0000393691,0.0009536351],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009415895,"threshold_uncertainty_score":0.002017975,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07581819605136321,"score_gpt":0.2220643966494539,"score_spread":0.1462462005980907,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}