{"id":"W2162002946","doi":"10.1371/journal.ppat.1002137","title":"Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens","year":2011,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":565,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Agricultural Research Service; National Institute of Food and Agriculture; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Natural Sciences and Engineering Research Council of Canada; Broad Institute; North Carolina State University; U.S. Department of Agriculture","keywords":"Verticillium dahliae; Biology; Verticillium; Verticillium wilt; Virulence; Fusarium oxysporum; Genome; Effector; Nicotiana benthamiana; Wilt disease; Comparative genomics; Periplasmic space; Microbiology; Gene; Genetics; Fusarium wilt; Genomics; Botany; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009607307,0.0001564877,0.0002718669,0.00002601824,0.0001947142,0.00001625119,0.000234244,0.0001122994,0.000251704],"category_scores_gemma":[0.00002784148,0.0000686843,0.0001348277,0.000186765,0.00006131193,0.0001332344,0.00007224198,0.0001634988,0.00006436754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003255561,"about_ca_system_score_gemma":0.00001402345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009310905,"about_ca_topic_score_gemma":0.002688954,"domain_scores_codex":[0.9990261,0.0001281826,0.000303233,0.0002210321,0.0001362627,0.000185215],"domain_scores_gemma":[0.9993918,0.0001171811,0.0001722028,0.0001090006,0.0001344844,0.00007531776],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003900408,0.0003354371,0.00102793,0.000006896893,0.00007312741,0.000007242966,0.005656574,0.00001267849,0.9907957,0.00007967269,0.00008600777,0.001879786],"study_design_scores_gemma":[0.0004059492,0.001284952,0.2188756,0.0001421418,0.0002495444,0.00003576305,0.01417526,0.004398362,0.7314851,0.0009266766,0.02721071,0.0008099496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980589,0.0002561205,0.00006178521,0.00001901373,0.0001066313,0.0001986925,0.0003961322,0.00003420627,0.0008684904],"genre_scores_gemma":[0.9983785,0.0002451902,0.0008979213,0.00005722501,0.00005983834,0.00001562367,0.0003063871,0.000001436232,0.00003793984],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2593105,"threshold_uncertainty_score":0.2800865,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07581819605136321,"score_gpt":0.2220643966494539,"score_spread":0.1462462005980907,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}