{"id":"W2162013434","doi":"10.1186/1297-9716-45-53","title":"Infected or not: are PCR-positive oropharyngeal swabs indicative of low pathogenic influenza A virus infection in the respiratory tract of Mallard Anas platyrhynchos?","year":2014,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Vetenskapsrådet; Naturvårdsverket; European Commission","keywords":"Anas; Respiratory tract; Virus; Virology; Biology; Respiratory system; Influenza A virus; Influenza A virus subtype H5N1; Cloaca; Microbiology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004984758,0.0003068269,0.0008091573,0.001413043,0.0002459058,0.00003144937,0.0004433662,0.0002717538,0.0001418304],"category_scores_gemma":[0.006623032,0.0002089885,0.0001838786,0.00222734,0.001081871,0.0002668492,0.0004546781,0.001566489,0.00006002138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003202194,"about_ca_system_score_gemma":0.0005116955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008894072,"about_ca_topic_score_gemma":0.0002247196,"domain_scores_codex":[0.9931521,0.002783543,0.0008316158,0.0005420338,0.001856882,0.0008338626],"domain_scores_gemma":[0.994969,0.0023667,0.0005092144,0.0008608941,0.001111449,0.0001827917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.02404746,0.002105054,0.3962644,0.001892696,0.0003454881,0.0009856059,0.006381626,0.00003795209,0.5617852,0.00008697376,0.0004158157,0.005651805],"study_design_scores_gemma":[0.003246995,0.01320865,0.9549208,0.0007248051,0.00003099819,0.00008080163,0.0004900995,0.00009461156,0.02514594,0.00003148547,0.00184057,0.0001842076],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962519,0.0004583577,0.000009832337,0.0001203989,0.00004028316,0.001728312,0.0001368628,0.00003297309,0.001221101],"genre_scores_gemma":[0.998439,0.0005370014,0.00006312619,0.0004111851,0.0001380388,0.0003126157,0.00001365293,0.00004558762,0.00003983227],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5586565,"threshold_uncertainty_score":0.8522304,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.246194209877213,"score_gpt":0.4579240516961718,"score_spread":0.2117298418189588,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}