{"id":"W2162081796","doi":"10.1002/ibd.21509","title":"Characterization of Escherichia coli isolated from gut biopsies of newly diagnosed patients with inflammatory bowel disease","year":2010,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Public Health Agency of Canada; University of Manitoba","funders":"","keywords":"Escherichia coli; Ulcerative colitis; Virulence; Microbiology; Inflammatory bowel disease; Pathogenesis; Pathogenic Escherichia coli; Crohn's disease; Biology; Medicine; Gastroenterology; Immunology; Disease; Internal medicine; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009213155,0.000367507,0.0003302608,0.0001108516,0.0001242641,0.00003494541,0.0004098442,0.0001714128,0.00007489003],"category_scores_gemma":[0.0005533102,0.0003267286,0.0001580566,0.0001582806,0.0006024688,0.00004555648,0.000278496,0.0001853538,0.000007275225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000160973,"about_ca_system_score_gemma":0.0004438973,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003334445,"about_ca_topic_score_gemma":0.0001039135,"domain_scores_codex":[0.9979445,0.0001324383,0.0005553665,0.000495099,0.0004964649,0.0003761198],"domain_scores_gemma":[0.9976806,0.00006717563,0.0004727008,0.0007664428,0.0006397811,0.0003733156],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001120149,0.0002724955,0.5268093,0.0001434293,0.0001667332,0.00001238547,0.00006656658,0.00001923642,0.471188,0.00001757123,0.00008340508,0.0001007404],"study_design_scores_gemma":[0.001851617,0.0002003552,0.9762501,0.00009417681,0.000114041,9.544645e-8,0.00004634556,0.0001564602,0.01992726,0.00002454741,0.0009760476,0.0003589922],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973999,0.0002509453,0.00005303718,0.0000372744,0.0001897124,0.0007145144,0.001260931,0.00004765283,0.00004608577],"genre_scores_gemma":[0.9980028,0.0001776214,0.0001234661,0.00007162809,0.0001831625,0.0001564063,0.001155254,0.0000637258,0.00006590319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4512607,"threshold_uncertainty_score":0.9999185,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004509046470971802,"score_gpt":0.2158430753060287,"score_spread":0.2113340288350569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}