{"id":"W2162152385","doi":"10.1128/aem.00197-08","title":"The Genome of <i>Polaromonas</i> sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Joint Genome Institute; National Science Foundation","keywords":"Transposable element; Biology; Plasmid; Bioremediation; Genetics; Bacteria; Gene; Genome; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007594008,0.0001159699,0.0001698867,0.00003337399,0.00008872902,0.000001838018,0.00008908177,0.0001445942,4.353601e-7],"category_scores_gemma":[0.00001136584,0.0000767805,0.0000200535,0.00005532362,0.0007467284,0.000002044482,0.0001337427,0.00007701154,1.802714e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009972345,"about_ca_system_score_gemma":0.000007491183,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005237773,"about_ca_topic_score_gemma":0.00001774147,"domain_scores_codex":[0.9994218,0.00002286896,0.0001799535,0.0002329461,0.00002084306,0.0001216008],"domain_scores_gemma":[0.9996943,0.0000114953,0.00008829631,0.0001776216,0.000004427566,0.00002385561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005143395,0.00001878307,0.0002337079,0.00001790173,0.00003359259,1.506614e-7,0.0002743744,0.000007764487,0.9968846,0.0002893367,0.000008795235,0.002179542],"study_design_scores_gemma":[0.0002355787,0.0002072135,0.01270522,0.000006365158,0.00001663463,0.000102569,0.0003773011,0.000002096662,0.9813147,0.0000691887,0.004872798,0.00009032689],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893793,0.01014279,0.0001182316,0.0001101597,0.00003967443,0.0001645579,0.00002760978,0.000003164922,0.00001448425],"genre_scores_gemma":[0.9932132,0.006240536,0.0004223837,0.00002680878,0.00003300525,0.000004477699,0.00003215306,0.000008129046,0.00001930484],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01556991,"threshold_uncertainty_score":0.3131018,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.001824186867722755,"score_gpt":0.1496822920095855,"score_spread":0.1478581051418627,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}