{"id":"W2162152385","doi":"10.1128/aem.00197-08","title":"The Genome of <i>Polaromonas</i> sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Joint Genome Institute; National Science Foundation","keywords":"Transposable element; Biology; Plasmid; Bioremediation; Genetics; Bacteria; Gene; Genome; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008686624,0.0004974448,0.0002621056,0.0004324445,0.0003129167,0.0005073159,0.0001497076,0.0003892037,0.0009355146],"category_scores_gemma":[0.0002525508,0.0001683327,0.0004282879,0.0008762467,0.0001924975,0.000450213,0.0002590145,0.000483912,0.000527073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002207648,"about_ca_system_score_gemma":0.0004469845,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00291901,"about_ca_topic_score_gemma":0.001914471,"domain_scores_codex":[0.9999275,0.0000069893,0.000005909958,0.00002330205,0.00002464844,0.00001151235],"domain_scores_gemma":[0.9998331,0.00002016599,0.00004894285,0.00001669398,0.0000364332,0.00004455337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001915969,0.0000238119,0.004582146,0.0002728261,0.00001464564,0.0001405347,0.0001046821,0.000283285,0.9871089,0.00007477441,0.0001368354,0.007066021],"study_design_scores_gemma":[0.00004461236,0.0007572867,0.5456189,0.0001758719,0.0003564747,0.00548827,0.001140784,0.002597393,0.3953342,0.0006734573,0.04772434,0.00008845783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9787942,0.002229602,0.003139806,0.0003293807,0.0000286581,0.00002812026,0.01353926,0.0001630702,0.001747862],"genre_scores_gemma":[0.9062625,0.005709253,0.01783152,0.0002304246,0.00007714621,0.00004091542,0.06532788,0.0001320864,0.004388124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00291901,"threshold_uncertainty_score":0.005804062,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.001824186867722755,"score_gpt":0.1496822920095855,"score_spread":0.1478581051418627,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}