{"id":"W2162203921","doi":"10.1186/1471-2148-8-210","title":"The molecular basis of color vision in colorful fish: Four Long Wave-Sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites","year":2008,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; British Columbia Knowledge Development Fund; National Geographic Society","keywords":"Opsin; Poeciliidae; Biology; Poecilia; Guppy; Evolutionary biology; Gene duplication; Xiphophorus; Genetics; Gene; Lineage (genetic); Concerted evolution; Tandem repeat; Trichromacy; Genome; Zoology; Color vision; Rhodopsin; Botany; Retinal","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002117563,0.0002226155,0.0002532415,0.0001152689,0.0002694281,0.000005627496,0.000150592,0.0003050712,0.00003082064],"category_scores_gemma":[0.0004824265,0.0001888509,0.000120862,0.0002803007,0.0007416512,0.00001145203,0.0002055767,0.0001215746,0.00001476188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001240222,"about_ca_system_score_gemma":0.0002196071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005542688,"about_ca_topic_score_gemma":0.00229705,"domain_scores_codex":[0.9983335,0.0002482474,0.0004308746,0.0004667516,0.0001559025,0.0003647433],"domain_scores_gemma":[0.9991891,0.0001485191,0.0001682905,0.0002499055,0.0001854953,0.00005865729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008607298,0.0001716525,0.617903,0.00001459854,0.00004033678,0.00003120127,0.00004366793,0.0003319062,0.3715226,0.0008642892,0.008183944,0.00003202177],"study_design_scores_gemma":[0.001035356,0.0002628376,0.9538941,0.00002252283,0.00001184503,0.0001039512,0.0001424499,0.000410391,0.03919264,0.0001746823,0.004507642,0.0002415968],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948906,0.00231334,0.0009921849,0.0007193608,0.0001390479,0.000306443,0.0001552838,0.00001091847,0.0004727875],"genre_scores_gemma":[0.9960104,0.0006736721,0.0009042519,0.0001582949,0.00002952268,0.00006162562,0.001703152,0.00001282043,0.0004462246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3359911,"threshold_uncertainty_score":0.7701118,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.019361104201286,"score_gpt":0.2267988221142375,"score_spread":0.2074377179129515,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}