{"id":"W2162447366","doi":"10.1139/g07-088","title":"Characterization of <i>Coffea</i> chloroplast microsatellites and evidence for the recent divergence of <i>C. arabica</i> and <i>C. eugenioides</i> chloroplast genomes","year":2007,"lang":"en","type":"article","venue":"Genome","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Coffea arabica; Genome; Microsatellite; Phylogenetic tree; Genetics; Indel; Coffea; Evolutionary biology; Ploidy; Botany; Gene; Allele; Genotype","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005959726,0.0001499089,0.0002345741,0.0000158501,0.0002064699,0.00002584944,0.0001872208,0.00007250055,0.00002515353],"category_scores_gemma":[0.00004432828,0.0000573325,0.00005556332,0.0002278158,0.0001719974,0.00009881974,0.00009047586,0.00005430464,0.00000112341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009964449,"about_ca_system_score_gemma":0.000008189114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002196446,"about_ca_topic_score_gemma":0.0002184107,"domain_scores_codex":[0.9989237,0.00002289172,0.0003427188,0.0002834749,0.0001622394,0.0002649429],"domain_scores_gemma":[0.9989287,0.0005401022,0.0002518417,0.00007512893,0.0001278135,0.00007642648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001765449,0.00002456803,0.003556153,0.0000595361,0.00001464825,0.000001110249,0.0001168269,0.000001013669,0.9747225,0.000118501,0.000002645936,0.02120596],"study_design_scores_gemma":[0.0001603558,0.0002732531,0.3898923,0.00007657336,0.00004593054,0.00001934535,0.0002003051,0.00001189661,0.586861,0.00009341895,0.02217452,0.0001910479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877297,0.01044844,0.0004409682,0.0003041729,0.0001337809,0.0004393822,0.0004761487,0.00001250414,0.00001486071],"genre_scores_gemma":[0.9736934,0.02562676,0.0002629256,0.0001378618,0.00011708,0.00001264321,0.00005025666,0.000001956874,0.000097128],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3878615,"threshold_uncertainty_score":0.2337952,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02569069012256418,"score_gpt":0.2197108090447903,"score_spread":0.1940201189222261,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}