{"id":"W2162470107","doi":"10.1093/molbev/msr075","title":"Evolutionarily Conserved cox1Trans-Splicing Without cis-Motifs","year":2011,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Jihočeská Univerzita v Českých Budějovicích","keywords":"Biology; Trans-splicing; Intron; RNA splicing; Gene; Genetics; In silico; Group II intron; RNA; Conserved sequence; Computational biology; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001787128,0.0001628229,0.0001446548,0.00005481904,0.0001971636,0.000006629476,0.0001451086,0.0003124934,0.00002876211],"category_scores_gemma":[0.00003914892,0.000168599,0.00007619559,0.00007319428,0.0002993208,0.000005282903,0.0001021882,0.0001091128,0.00002117289],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001743596,"about_ca_system_score_gemma":0.00005263276,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001517033,"about_ca_topic_score_gemma":0.00003948214,"domain_scores_codex":[0.9989948,0.000133539,0.0001481657,0.0003970141,0.00005264057,0.0002738836],"domain_scores_gemma":[0.999529,0.000004636388,0.00006241179,0.0002388991,0.00007354587,0.00009148713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002502786,0.00004451459,0.3631704,0.00001341362,0.00008684168,0.000005901978,0.0001095234,0.000004997912,0.6277718,0.008206379,0.0001201715,0.0002157839],"study_design_scores_gemma":[0.001689518,0.001091841,0.746585,0.00002615176,0.0001160604,0.0001270366,0.0001330116,0.000191528,0.2350682,0.01264167,0.001694324,0.000635709],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8793748,0.00158122,0.1169391,0.0000548227,0.0001398972,0.0001849133,0.00003027071,0.0000248212,0.001670166],"genre_scores_gemma":[0.9974157,0.00004562939,0.001892723,0.0003009827,0.00005604887,0.00001425011,0.0001277443,0.00001163114,0.000135257],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3927036,"threshold_uncertainty_score":0.6875268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358212929978483,"score_gpt":0.2349983013046682,"score_spread":0.2214161720048834,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}