{"id":"W2162470107","doi":"10.1093/molbev/msr075","title":"Evolutionarily Conserved cox1Trans-Splicing Without cis-Motifs","year":2011,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Jihočeská Univerzita v Českých Budějovicích","keywords":"Biology; Trans-splicing; Intron; RNA splicing; Gene; Genetics; In silico; Group II intron; RNA; Conserved sequence; Computational biology; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000132834,0.0002455012,0.0001680074,0.000210244,0.0002414371,0.0003189654,0.0002368867,0.0002877479,0.001043463],"category_scores_gemma":[0.0002390891,0.0001775681,0.0002201855,0.00017057,0.0002397454,0.0001709479,0.0002271499,0.0003249292,0.0004534441],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002090036,"about_ca_system_score_gemma":0.0002207581,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003883877,"about_ca_topic_score_gemma":0.001172596,"domain_scores_codex":[0.9998505,0.00001392591,0.00001236673,0.00007168596,0.00003021877,0.0000212115],"domain_scores_gemma":[0.9996878,0.00004349157,0.0001214932,0.00005478087,0.00003647338,0.00005603826],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001299993,0.00002233685,0.01120233,0.00005110266,0.00001261961,0.0002340303,0.00005725065,0.00008484208,0.9851359,0.0001866828,0.00001739082,0.002865655],"study_design_scores_gemma":[0.00004362321,0.0007894542,0.4655445,0.00004348975,0.0001311435,0.007896315,0.0003116331,0.002938655,0.5165822,0.0004875833,0.005193124,0.00003833633],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969329,0.0003441774,0.001558174,0.00002384433,0.000006788652,0.00001136526,0.0001690021,0.0000330717,0.0009207207],"genre_scores_gemma":[0.9971604,0.0001120127,0.001500672,0.00003013583,0.000003525284,0.000009221156,0.0005418794,0.00001059538,0.0006314495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001043463,"threshold_uncertainty_score":0.003490746,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358212929978483,"score_gpt":0.2349983013046682,"score_spread":0.2214161720048834,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}