{"id":"W2162629389","doi":"10.1128/aem.01678-12","title":"Intestinal Origin of Sourdough <i>Lactobacillus reuteri</i> Isolates as Revealed by Phylogenetic, Genetic, and Physiological Analysis","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of Food and Agriculture","keywords":"Lactobacillus reuteri; Biology; Genome; Phylogenetic tree; Genetics; Sequence analysis; Rodent; Phylogenetics; Lactobacillus; Microbiology; Whole genome sequencing; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008277293,0.0001924279,0.0003217474,0.00001412362,0.00009562964,0.00001016258,0.0001144345,0.0001578625,0.0002368274],"category_scores_gemma":[0.000002718523,0.00008762586,0.00006264178,0.0001055819,0.0003719528,0.00002303239,0.0001919907,0.0001006352,0.000014083],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001267999,"about_ca_system_score_gemma":0.000001169518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003533977,"about_ca_topic_score_gemma":0.000004951576,"domain_scores_codex":[0.9990346,0.00004464352,0.0002318422,0.0003174301,0.00003052404,0.000340888],"domain_scores_gemma":[0.9996535,0.00005703833,0.0001069539,0.00006129974,0.000002716899,0.0001185553],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003419553,0.0001297097,0.06519189,0.000003653607,0.00009425665,3.11751e-7,0.00003529186,8.711235e-7,0.9302266,0.00005388466,0.0001108728,0.004118506],"study_design_scores_gemma":[0.0007801015,0.001299454,0.8182874,0.00000961203,0.0004657458,0.0001337972,0.0006114553,0.00003730968,0.1557062,0.0003947874,0.02152104,0.0007531334],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977974,0.001560237,0.00001252553,0.00008787607,0.00002371972,0.0001413822,0.0002131047,0.00001217204,0.0001515327],"genre_scores_gemma":[0.997987,0.0008825043,0.0003486923,0.0003049791,0.00005293583,0.000009013933,0.0003728548,0.000001573334,0.00004043257],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7745204,"threshold_uncertainty_score":0.3573279,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009522952645707138,"score_gpt":0.1871171592687692,"score_spread":0.1775942066230621,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}