{"id":"W2163132006","doi":"10.1186/1477-5956-9-66","title":"Comparative shotgun proteomic analysis of Clostridium acetobutylicum from butanol fermentation using glucose and xylose","year":2011,"lang":"en","type":"article","venue":"Proteome Science","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Oak Ridge National Laboratory; UT-Battelle; McGill University; Battelle; U.S. Department of Energy","keywords":"Clostridium acetobutylicum; Xylose; Shotgun proteomics; Butanol; Fermentation; Shotgun; Clostridium; Food science; Chemistry; Counterattack; Proteomics; Biotechnology; Biochemistry; Microbiology; Biology; Bacteria; Ethanol","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002270433,0.0001110633,0.0002003635,0.0003560671,0.0001111466,0.00002950009,0.0001630806,0.00004342393,0.00009748755],"category_scores_gemma":[0.00001292298,0.00009975105,0.00003268176,0.001597189,0.0003589366,0.0004173589,0.0000589911,0.0000847963,0.000007699039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007325427,"about_ca_system_score_gemma":0.00003564065,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001781615,"about_ca_topic_score_gemma":0.000004796132,"domain_scores_codex":[0.9991046,0.00002064618,0.0001920089,0.0002845354,0.0002233958,0.0001748276],"domain_scores_gemma":[0.9995589,0.00000455118,0.00007463844,0.0001823208,0.0001026397,0.00007696047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001898827,0.0000208332,0.001884122,0.00002556736,0.00005543386,3.606745e-7,0.001474654,0.0001870505,0.9961015,0.00001356424,0.000002237753,0.0002157167],"study_design_scores_gemma":[0.0001445801,0.0000355221,0.02677388,0.00001105326,0.00009904506,0.000001015469,0.0002427225,0.05471659,0.9177502,0.0001024944,0.0000088974,0.0001139392],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971117,0.00007818469,0.001893422,0.00002699,0.0001322589,0.0005112903,0.00002573226,0.00005987992,0.0001605071],"genre_scores_gemma":[0.9897655,0.00002076397,0.01015086,0.00001028836,0.00001853681,0.00001465971,0.000005312399,0.000004890528,0.000009157073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07835121,"threshold_uncertainty_score":0.406773,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05108184600795647,"score_gpt":0.2630136502006396,"score_spread":0.2119318041926831,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}