{"id":"W2163178976","doi":"10.1128/cvi.05583-11","title":"Human Endogenous Retrovirus K(HML-2) Gag- and Env-Specific T-Cell Responses Are Infrequently Detected in HIV-1-Infected Subjects Using Standard Peptide Matrix-Based Screening","year":2011,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Maple Leaf Medical Clinic; St. Michael's Hospital","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Peptide; Virology; Group-specific antigen; Retrovirus; Biology; Endogeny; Endogenous retrovirus; Molecular biology; Human immunodeficiency virus (HIV); Virus; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007535908,0.0003521325,0.0006074579,0.0002083645,0.0002199233,0.00004517112,0.0002395246,0.0004344976,0.00003543267],"category_scores_gemma":[0.0003396558,0.0003227949,0.0001213643,0.0001973383,0.0001669392,0.0000206183,0.000285865,0.0004719294,0.000004187865],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001883925,"about_ca_system_score_gemma":0.00009277162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001010513,"about_ca_topic_score_gemma":0.00006326297,"domain_scores_codex":[0.9974555,0.0003990333,0.001022608,0.0005319243,0.00008633405,0.0005045377],"domain_scores_gemma":[0.998706,0.0001246875,0.0003995646,0.0005244154,0.0001316204,0.0001137085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004038041,0.0002674781,0.461239,0.00007766647,0.0001353957,0.00005084784,0.0001472536,0.000009225921,0.5310925,0.00004146876,0.0001024375,0.002798619],"study_design_scores_gemma":[0.01101057,0.003239189,0.8621299,0.0001115448,0.00008117487,0.0002068482,0.0005195996,0.0003741682,0.1192497,0.0001043111,0.002248873,0.0007241425],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934768,0.004798919,0.0009787806,0.00003660857,0.0001018294,0.000340656,0.00004211541,0.00003620208,0.0001881096],"genre_scores_gemma":[0.9946658,0.001085273,0.003836706,0.00009780289,0.00009107285,0.00001498604,0.00007851762,0.00004323634,0.00008658487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4118428,"threshold_uncertainty_score":0.9999224,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08118772685863337,"score_gpt":0.3008050444235537,"score_spread":0.2196173175649203,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}