{"id":"W2163178976","doi":"10.1128/cvi.05583-11","title":"Human Endogenous Retrovirus K(HML-2) Gag- and Env-Specific T-Cell Responses Are Infrequently Detected in HIV-1-Infected Subjects Using Standard Peptide Matrix-Based Screening","year":2011,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Maple Leaf Medical Clinic; St. Michael's Hospital","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Peptide; Virology; Group-specific antigen; Retrovirus; Biology; Endogeny; Endogenous retrovirus; Molecular biology; Human immunodeficiency virus (HIV); Virus; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006216944,0.00043082,0.0004041346,0.000251998,0.0002891741,0.0005249743,0.0001310649,0.0005402286,0.002273553],"category_scores_gemma":[0.001203965,0.0002726174,0.0001029941,0.000152723,0.0003297133,0.0002615509,0.0001521052,0.0003794459,0.0004741091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001032893,"about_ca_system_score_gemma":0.00009096038,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003997464,"about_ca_topic_score_gemma":0.0004191739,"domain_scores_codex":[0.9995301,0.0001733014,0.00003295722,0.000123626,0.00008241054,0.00005752805],"domain_scores_gemma":[0.9995342,0.0002224239,0.00009223678,0.0000396634,0.00004517592,0.00006628662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002408377,0.0005462341,0.3436109,0.0002201245,0.00008921621,0.003765688,0.001280755,0.0002261202,0.6225683,0.0002095063,0.0004873588,0.02458741],"study_design_scores_gemma":[0.0001763436,0.008914831,0.7731607,0.00005072721,0.0002131274,0.02576567,0.001182525,0.001929242,0.1846602,0.0003684928,0.00354083,0.00003733601],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987922,0.0001966846,0.0003678549,0.00002341126,0.000003406705,0.00001259589,0.00003332809,0.00001762821,0.0005529925],"genre_scores_gemma":[0.9993392,0.00005294921,0.0002350272,0.00003149953,0.00000728965,0.000007829623,0.00003919017,0.000003880893,0.0002831737],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002273553,"threshold_uncertainty_score":0.007605791,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08118772685863337,"score_gpt":0.3008050444235537,"score_spread":0.2196173175649203,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}